PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P05030_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37704.6 Da PI: 10.515 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 58 | 102 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+++de l +av+ + g++Wk+Ia+ ++ Rt+ qc +rwqk+l GSMUA_Achr6P05030_001 58 GWTPQDDETLRKAVEAYKGRCWKKIAESFP-DRTEVQCLHRWQKVL 102 6*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.7 | 7.5e-20 | 108 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l +v+++G++ W+ Ia+ ++ gR +kqc++rw+++l GSMUA_Achr6P05030_001 108 KGPWTPEEDEKLTSLVAKYGPKKWSVIANSLP-GRIGKQCRERWHNHL 154 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 50.7 | 4.2e-16 | 160 | 202 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE++ l++a++ G++ W+ Ia+ ++ gRt +++k++w+ GSMUA_Achr6P05030_001 160 KDAWTEEEELALLNAHHIRGNK-WAEIAKALP-GRTHNSIKNHWN 202 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.832 | 50 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-14 | 55 | 104 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.48E-14 | 58 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.9E-15 | 58 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 59 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.93E-12 | 59 | 102 | No hit | No description |
PROSITE profile | PS51294 | 30.954 | 103 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-32 | 105 | 201 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-18 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-19 | 108 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-15 | 110 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 113 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-14 | 159 | 207 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.38 | 159 | 209 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.1E-14 | 160 | 202 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.59E-10 | 162 | 202 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 163 | 209 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MKIQQSCVEN KQSAVASISS LSEGSFGLSR VSPAVSSPPT SLPSRRRTSG PTRRAKSGWT 60 PQDDETLRKA VEAYKGRCWK KIAESFPDRT EVQCLHRWQK VLNPELIKGP WTPEEDEKLT 120 SLVAKYGPKK WSVIANSLPG RIGKQCRERW HNHLNPTINK DAWTEEEELA LLNAHHIRGN 180 KWAEIAKALP GRTHNSIKNH WNCSLKKKLD FFLETGKLPK QFKNLMLKLL IILLLKAVCS 240 LHYLISALYL IWEQMSKFSS SPCSRGAILF NGKNFNVSPP YRLRSKRTAI IKSVEKQLDF 300 AFEETNCDGN ANPLKMAVAS SSIFKSRNVL PII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-68 | 55 | 209 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-68 | 55 | 209 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018682640.1 | 1e-163 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Refseq | XP_018682641.1 | 1e-163 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Refseq | XP_018682642.1 | 1e-163 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Refseq | XP_018682643.1 | 1e-163 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Refseq | XP_018682644.1 | 1e-163 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Refseq | XP_018682645.1 | 1e-163 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Refseq | XP_018682647.1 | 1e-163 | PREDICTED: myb-related protein 3R-1-like isoform X1 | ||||
Swissprot | Q8H1P9 | 1e-115 | MB3R3_ARATH; Transcription factor MYB3R-3 | ||||
TrEMBL | M0T4A1 | 0.0 | M0T4A1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P05030_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 1e-101 | myb domain protein 3r-3 |
Publications ? help Back to Top | |||
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