PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P05030_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 333aa    MW: 37704.6 Da    PI: 10.515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P05030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-1658102348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             WT+++de l +av+ + g++Wk+Ia+ ++  Rt+ qc +rwqk+l
  GSMUA_Achr6P05030_001  58 GWTPQDDETLRKAVEAYKGRCWKKIAESFP-DRTEVQCLHRWQKVL 102
                            6*****************************.************986 PP

2Myb_DNA-binding62.77.5e-20108154148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+WT+eEde+l  +v+++G++ W+ Ia+ ++ gR +kqc++rw+++l
  GSMUA_Achr6P05030_001 108 KGPWTPEEDEKLTSLVAKYGPKKWSVIANSLP-GRIGKQCRERWHNHL 154
                            79******************************.*************97 PP

3Myb_DNA-binding50.74.2e-16160202145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            +++WT+eE++ l++a++  G++ W+ Ia+ ++ gRt +++k++w+
  GSMUA_Achr6P05030_001 160 KDAWTEEEELALLNAHHIRGNK-WAEIAKALP-GRTHNSIKNHWN 202
                            689*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.83250102IPR017930Myb domain
SMARTSM007175.1E-1455104IPR001005SANT/Myb domain
SuperFamilySSF466892.48E-1458112IPR009057Homeodomain-like
PfamPF002499.9E-1558102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1959112IPR009057Homeodomain-like
CDDcd001675.93E-1259102No hitNo description
PROSITE profilePS5129430.954103158IPR017930Myb domain
SuperFamilySSF466896.24E-32105201IPR009057Homeodomain-like
SMARTSM007171.3E-18107156IPR001005SANT/Myb domain
PfamPF002499.4E-19108154IPR001005SANT/Myb domain
CDDcd001671.08E-15110154No hitNo description
Gene3DG3DSA:1.10.10.602.1E-29113162IPR009057Homeodomain-like
SMARTSM007178.5E-14159207IPR001005SANT/Myb domain
PROSITE profilePS5129419.38159209IPR017930Myb domain
PfamPF002493.1E-14160202IPR001005SANT/Myb domain
CDDcd001676.59E-10162202No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20163209IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MKIQQSCVEN KQSAVASISS LSEGSFGLSR VSPAVSSPPT SLPSRRRTSG PTRRAKSGWT  60
PQDDETLRKA VEAYKGRCWK KIAESFPDRT EVQCLHRWQK VLNPELIKGP WTPEEDEKLT  120
SLVAKYGPKK WSVIANSLPG RIGKQCRERW HNHLNPTINK DAWTEEEELA LLNAHHIRGN  180
KWAEIAKALP GRTHNSIKNH WNCSLKKKLD FFLETGKLPK QFKNLMLKLL IILLLKAVCS  240
LHYLISALYL IWEQMSKFSS SPCSRGAILF NGKNFNVSPP YRLRSKRTAI IKSVEKQLDF  300
AFEETNCDGN ANPLKMAVAS SSIFKSRNVL PII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68552095159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68552095159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682640.11e-163PREDICTED: myb-related protein 3R-1-like isoform X1
RefseqXP_018682641.11e-163PREDICTED: myb-related protein 3R-1-like isoform X1
RefseqXP_018682642.11e-163PREDICTED: myb-related protein 3R-1-like isoform X1
RefseqXP_018682643.11e-163PREDICTED: myb-related protein 3R-1-like isoform X1
RefseqXP_018682644.11e-163PREDICTED: myb-related protein 3R-1-like isoform X1
RefseqXP_018682645.11e-163PREDICTED: myb-related protein 3R-1-like isoform X1
RefseqXP_018682647.11e-163PREDICTED: myb-related protein 3R-1-like isoform X1
SwissprotQ8H1P91e-115MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLM0T4A10.0M0T4A1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P05030_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.11e-101myb domain protein 3r-3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]