PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P04510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 1237aa    MW: 137553 Da    PI: 8.6271
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P04510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.97.6e-15203239135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  GSMUA_Achr6P04510_001 203 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWANKGT 239
                            **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.4E-106297IPR010399Tify domain
PROSITE profilePS5132014.5696297IPR010399Tify domain
PfamPF062005.1E-126596IPR010399Tify domain
PfamPF062033.4E-14131172IPR010402CCT domain
PROSITE profilePS5101713.096131173IPR010402CCT domain
SMARTSM004013.0E-10197251IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-10200248No hitNo description
CDDcd002021.52E-12202247No hitNo description
Gene3DG3DSA:3.30.50.102.8E-13202241IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-12203239IPR000679Zinc finger, GATA-type
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
PfamPF164862.4E-32395526IPR032474Protein argonaute, N-terminal
SMARTSM011631.3E-24535587IPR014811Argonaute, linker 1 domain
PfamPF086992.5E-20538586IPR014811Argonaute, linker 1 domain
SuperFamilySSF1016905.18E-54582742IPR003100PAZ domain
Gene3DG3DSA:2.170.260.105.1E-36586708No hitNo description
CDDcd028464.53E-37587701No hitNo description
PROSITE profilePS5082127.352588702IPR003100PAZ domain
PfamPF021702.9E-24594718IPR003100PAZ domain
SMARTSM009492.2E-4598722IPR003100PAZ domain
PfamPF164881.2E-15728774IPR032472Argonaute linker 2 domain
CDDcd0465707461195No hitNo description
Gene3DG3DSA:3.40.50.23002.2E-17762933No hitNo description
PfamPF164877.6E-11784862IPR032473Protein argonaute, Mid domain
SuperFamilySSF530985.82E-858721196IPR012337Ribonuclease H-like domain
PROSITE profilePS5082252.548771196IPR003165Piwi domain
SMARTSM009501.7E-1238771196IPR003165Piwi domain
PfamPF021713.4E-1028781195IPR003165Piwi domain
Gene3DG3DSA:3.30.420.106.6E-209521194IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007140Biological Processmale meiosis
GO:0007143Biological Processfemale meiotic division
GO:0009561Biological Processmegagametogenesis
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0055046Biological Processmicrogametogenesis
GO:0005731Cellular Componentnucleolus organizer region
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1237 aa     Download sequence    Send to blast
MSSNANPEDL GMYGHDDAAV DASGGQGAIE GATGGEKMGV SLIPTSDQDH LAEAMDAAAP  60
LMSVTSNQLT LLFQGEVYVF DSVSPEKVQA VLLLLGGCEV PTGAAGMTLS GQQDDRGYDD  120
LLHRTNIPAK RIASLIRFRE KRKERNFDKK IRYNVRKEVA LRMQRRKGQF AGKAITQEGA  180
LASSSGDPLQ SSIQEDPPRE SKCQNCGISE KMTPAMRRGP AGPRSLCNAC GLMWANKGTL  240
RSPSRAKIGT PSTANPSEHG QAIDSELISD NKLHVHTPSN HDAVVSNSEI VGDGTTADVQ  300
QADTVGLKTE LRERAPPPTT SYYSPPADVP SSSAAAAAGT SSTSLSQELE QRLTIRDPEP  360
AAAEPEATLT QSTPASSKAL RPPARPGFGK AGVTCIVRAN HFLVEVADKS ICHYDVAISP  420
ECTSRITNRR IITELVRMHK NGVLGNRLPV YDGRKSLYTA GPLPFTDKAF VIKLADEEKT  480
DKTREKEFKV TIKLAGQADL DHLRNFLQGR QMDAPQETIQ ALDIVLRESP SANYVTSSRS  540
FFSPMFGHKC DIGEGLECWR GYFQSLRPTQ MGLSLNTDIS ATSFYKPVTV VEFVAEYLNI  600
YDIMRPLSDP DRIKIKKALR GIKVEAMHNR NCRRRYKITG ITSMPMSEIM FPVDESGTKL  660
SVVQYFRDRY QCSLKHVSWP CLQAGSDARP TYLPMEVCRI IEGQRFTKKL NDRQVTSILK  720
ATCQRPRDRE RSILEMVRLN KFNDDKFVKE FGIRIKNEFT PVEARVLPPP RLKYHESGRE  780
KLCSPNVGQW NMINKRMVNG GNVEHWTCLS FSRLRGDEID RFCGGLVNMC NNIGMVFNPR  840
PFVDIWAVHP DSMETALRKV HSQSLNCLGK SGRHIQLLII VLPEKSGHYG RIKRICETDL  900
GIVSQCCLPK HVAKCNNQYL ENVALKINVK VGGRNTVLED ALHYRIPFVT DKPTIIFGAD  960
VTHPAPGEDA SSIAAVVASI DWPEVTKYKG LVSAQQNREE MIQDLFKVTQ DPQKGTIYGG  1020
MIRELLLSFF RATKQKPHRI IFYRDGVSEG QFSQVLLHEM TAIRKACASL EEGYLPPTTF  1080
VVVQKRHHTR LFPEVHGSRD LTDRSGNILP GTVVDKMICH PTEFDFFLCS HAGIQGTSRP  1140
THYHVLFDEN HFSADDLQRL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARYYMEGELS  1200
DGGSTSAGGR SRSKNTSTEV RQLPLIKHNV QEVMFYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4f3t_A0.0379122324850Protein argonaute-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for the progression of premeiotic mitosis and meiosis during sporogenesis. Regulates the cell division of premeiotic germ cells, the proper modification of meiotic chromosomes, and the faithful progression of meiosis, probably via small RNA-mediated gene silencing. May be involved in histone H3 'Lys-9' demethylation in the pericentromeric region. {ECO:0000269|PubMed:17675402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403386.10.0PREDICTED: protein argonaute MEL1-like
SwissprotQ851R20.0MEL1_ORYSJ; Protein argonaute MEL1
TrEMBLM0T4490.0M0T449_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P04510_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-60ZIM-LIKE 2
Publications ? help Back to Top
  1. Nonomura K, et al.
    A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.
    Plant Cell, 2007. 19(8): p. 2583-94
    [PMID:17675402]
  2. Kapoor M, et al.
    Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.
    BMC Genomics, 2008. 9: p. 451
    [PMID:18826656]
  3. Tang X, et al.
    Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.
    Plant Physiol., 2010. 154(4): p. 1855-70
    [PMID:20959420]
  4. Yi J, et al.
    The rice gene DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1) is required for early tapetum development and meiosis.
    Plant J., 2012. 70(2): p. 256-70
    [PMID:22111585]
  5. Komiya R,Nonomura K
    Isolation and bioinformatic analyses of small RNAs interacting with germ cell-specific argonaute in rice.
    Methods Mol. Biol., 2014. 1093: p. 235-45
    [PMID:24178570]
  6. Komiya R, et al.
    Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.
    Plant J., 2014. 78(3): p. 385-97
    [PMID:24635777]
  7. Ta KN, et al.
    miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species.
    Rice (N Y), 2016. 9(1): p. 10
    [PMID:26969003]
  8. Liu H,Nonomura KI
    A wide reprogramming of histone H3 modifications during male meiosis I in rice is dependent on the Argonaute protein MEL1.
    J. Cell. Sci., 2016. 129(19): p. 3553-3561
    [PMID:27521428]