PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P04400_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 275aa MW: 30411.3 Da PI: 8.2247 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l+ ++ +G g W++ +++ g++R++k+c++rw++yl GSMUA_Achr6P04400_001 14 RGAWTAHEDHILKSYIDTHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +Edel+++++k+lG++ W++Ia +++ gRt++++k++w++ GSMUA_Achr6P04400_001 67 RGNISDDEDELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.095 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.81E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.442 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGRKPCCAKE GLNRGAWTAH EDHILKSYID THGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SDDEDELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAYGKA 120 YQPKPCMSNN SAAGPAAITA KAAPDHTAVV VQTKAQRCTK TFFHHDQALL VSSSTHQQHL 180 QPASKPSMSP PKASPDAPAN ADPSRAAGDL PLTVGEEDED PCFSMSLDST FLLSGLSTEF 240 WMESDSLQPH IEFNLSSVTA FLDADDDWLN WTPSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403378.1 | 0.0 | PREDICTED: anthocyanin regulatory C1 protein | ||||
Swissprot | Q9FJA2 | 5e-65 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | M0T438 | 0.0 | M0T438_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P04400_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-64 | MYB family protein |