PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P04170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 271aa MW: 30719.5 Da PI: 5.3665 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.8 | 3.2e-19 | 20 | 102 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W++ e+ +Li+a+ e++ +l+rg+lk+++Weev++++ ++ g+ +++ +qC++k+e+l+kry++++ + ++ s +p+f+++ GSMUA_Achr6P04170_001 20 WSHIETTHLIDAYAERWYALKRGQLKAQQWEEVAAAVaARCGIdepSKTGTQCRHKIEKLRKRYRAERLRPGS------SVWPFFSRM 101 ************************************964445544489*****************99988886......47******* PP trihelix 86 e 86 + GSMUA_Achr6P04170_001 102 D 102 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.1E-21 | 18 | 104 | No hit | No description |
SMART | SM00595 | 1.4E-5 | 27 | 109 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAAAGPPAAP PRRPVPGQPW SHIETTHLID AYAERWYALK RGQLKAQQWE EVAAAVAARC 60 GIDEPSKTGT QCRHKIEKLR KRYRAERLRP GSSVWPFFSR MDRMECGPLP ISARQPVPPR 120 PASAPSTDED EVEDEEEEEE EDERVGSNTR SINGILREPN WGPSRVPRNH VPATRRALEM 180 EEGESEEEES EGEDAGGNEV TSQVAAVLRG FGDGLVRMEK RRMQLMREVE RDWMQMETKR 240 AEMLRESQRC LLDMIADALP SSKKAKKSHD L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403348.1 | 0.0 | PREDICTED: uncharacterized protein LOC103986924 | ||||
TrEMBL | M0T415 | 0.0 | M0T415_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P04170_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 1e-29 | Trihelix family protein |