PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P04170_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 271aa    MW: 30719.5 Da    PI: 5.3665
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P04170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.83.2e-1920102286
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                            W++ e+ +Li+a+ e++ +l+rg+lk+++Weev++++ ++ g+   +++ +qC++k+e+l+kry++++ + ++      s +p+f+++
  GSMUA_Achr6P04170_001  20 WSHIETTHLIDAYAERWYALKRGQLKAQQWEEVAAAVaARCGIdepSKTGTQCRHKIEKLRKRYRAERLRPGS------SVWPFFSRM 101
                            ************************************964445544489*****************99988886......47******* PP

               trihelix  86 e 86 
                            +
  GSMUA_Achr6P04170_001 102 D 102
                            8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-2118104No hitNo description
SMARTSM005951.4E-527109IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAAAGPPAAP PRRPVPGQPW SHIETTHLID AYAERWYALK RGQLKAQQWE EVAAAVAARC  60
GIDEPSKTGT QCRHKIEKLR KRYRAERLRP GSSVWPFFSR MDRMECGPLP ISARQPVPPR  120
PASAPSTDED EVEDEEEEEE EDERVGSNTR SINGILREPN WGPSRVPRNH VPATRRALEM  180
EEGESEEEES EGEDAGGNEV TSQVAAVLRG FGDGLVRMEK RRMQLMREVE RDWMQMETKR  240
AEMLRESQRC LLDMIADALP SSKKAKKSHD L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403348.10.0PREDICTED: uncharacterized protein LOC103986924
TrEMBLM0T4150.0M0T415_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P04170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-29Trihelix family protein