PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P03200_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 213aa MW: 24700.7 Da PI: 7.0102 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 7 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGf FhPtd elv++yLk+k++g+++++ +i+evdiyk+ePwdLp+ +v ++++ w+fF+ r++ky+ g+r+nrat++gyWk+t GSMUA_Achr6P03200_001 7 LPPGFGFHPTDVELVSHYLKRKTQGHNFDE--IIPEVDIYKHEPWDLPAkcHVPTRDNTWHFFTLRERKYRAGSRSNRATEEGYWKST 92 79*************************877..8***************5346667999****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++v+ +++++g+kktLv+++grap+g++tdW+mhey l GSMUA_Achr6P03200_001 93 GNDRNVKF-QNRVIGTKKTLVYHEGRAPRGKRTDWIMHEYDL 133 *******9.9999***************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-55 | 5 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.201 | 7 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-25 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
METLTALPPG FGFHPTDVEL VSHYLKRKTQ GHNFDEIIPE VDIYKHEPWD LPAKCHVPTR 60 DNTWHFFTLR ERKYRAGSRS NRATEEGYWK STGNDRNVKF QNRVIGTKKT LVYHEGRAPR 120 GKRTDWIMHE YDLDEKEFAS PGLKGTFVLC RVTKKNDWPL ENEKTEPVVC KESSSRSSDM 180 EDLDAWVAGL FDPNFGTNSN RLEHEAVVCP SLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-46 | 7 | 158 | 15 | 172 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403231.1 | 1e-156 | PREDICTED: NAC domain-containing protein 74 isoform X1 | ||||
Refseq | XP_009403232.1 | 1e-156 | PREDICTED: NAC domain-containing protein 74 isoform X1 | ||||
Refseq | XP_018683711.1 | 1e-156 | PREDICTED: NAC domain-containing protein 74 isoform X1 | ||||
Swissprot | Q7GCL7 | 2e-75 | NAC74_ORYSJ; NAC domain-containing protein 74 | ||||
TrEMBL | M0T3R8 | 1e-159 | M0T3R8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P03200_001 | 1e-159 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7560 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 6e-65 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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