PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P02680_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 385aa MW: 43657.6 Da PI: 8.3384 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 9e-53 | 16 | 142 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d GSMUA_Achr6P02680_001 16 LPGFRFHPTDEELVSFYLKRKVQQRPLSI-ELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTD 102 69***************************.89***************8888999********************************** PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl GSMUA_Achr6P02680_001 103 RPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 *****956677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-58 | 13 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 15 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-25 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045770 | Biological Process | positive regulation of asymmetric cell division | ||||
GO:0048103 | Biological Process | somatic stem cell division | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MDERSHDMEK GDEVILPGFR FHPTDEELVS FYLKRKVQQR PLSIELIRQL DIYKYDPWDL 60 PKLATTGEKE WYFYCPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSLTDSSL FKRPLDKNIP ANDSWAICRI FKKTNSVAQR 180 ALSHSWVSPQ PEATEPDLFS ISRAAHSIHF GSEMVSCITE AGSAPAIQVG CSSQQQQQQQ 240 HNTIISYPPL DFSCYRPIDL GHCRPPPSVQ MPTNFTFSPA EMQLTSKCTM DVTSMLLNLS 300 PAILGDVEKA SHMDFLQQPQ QCNEFAKMVN ACGLNSNRWG GSRKSSVDFP FGLPTMFSDE 360 WKPNLPLNSS SYPSEISTSY STNKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-54 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 17 | 179 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-54 | 17 | 179 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 17 | 179 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403167.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
Refseq | XP_018683734.1 | 0.0 | PREDICTED: protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-108 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | M0T3L6 | 0.0 | M0T3L6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P02680_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3366 | 38 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-110 | NAC family protein |
Publications ? help Back to Top | |||
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