PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02680_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 385aa    MW: 43657.6 Da    PI: 8.3384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.89e-53161422128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                             pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d
  GSMUA_Achr6P02680_001  16 LPGFRFHPTDEELVSFYLKRKVQQRPLSI-ELIRQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTD 102
                            69***************************.89***************8888999********************************** PP

                    NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  GSMUA_Achr6P02680_001 103 RPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142
                            *****956677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5813173IPR003441NAC domain
PROSITE profilePS5100557.4615173IPR003441NAC domain
PfamPF023651.1E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDERSHDMEK GDEVILPGFR FHPTDEELVS FYLKRKVQQR PLSIELIRQL DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSTRPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSLTDSSL FKRPLDKNIP ANDSWAICRI FKKTNSVAQR  180
ALSHSWVSPQ PEATEPDLFS ISRAAHSIHF GSEMVSCITE AGSAPAIQVG CSSQQQQQQQ  240
HNTIISYPPL DFSCYRPIDL GHCRPPPSVQ MPTNFTFSPA EMQLTSKCTM DVTSMLLNLS  300
PAILGDVEKA SHMDFLQQPQ QCNEFAKMVN ACGLNSNRWG GSRKSSVDFP FGLPTMFSDE  360
WKPNLPLNSS SYPSEISTSY STNKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-541717919171NO APICAL MERISTEM PROTEIN
1ut4_B3e-541717919171NO APICAL MERISTEM PROTEIN
1ut7_A3e-541717919171NO APICAL MERISTEM PROTEIN
1ut7_B3e-541717919171NO APICAL MERISTEM PROTEIN
4dul_A3e-541717919171NAC domain-containing protein 19
4dul_B3e-541717919171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403167.10.0PREDICTED: protein FEZ-like
RefseqXP_018683734.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-108FEZ_ARATH; Protein FEZ
TrEMBLM0T3L60.0M0T3L6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02680_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-110NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]