PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 361aa    MW: 41037.3 Da    PI: 7.8286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++ Ed++l d+vk +G g+W + ++  g++R++ +c++rw++yl
  GSMUA_Achr6P02530_001 14 KGSWSATEDKILTDYVKAHGEGRWGKLPKSAGLNRCPRSCRLRWLNYL 61
                           799*******************************************97 PP
2Myb_DNA-binding50.74.2e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSMUA_Achr6P02530_001  67 RGNISHEEEDLIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 112
                            78999*****************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.57961IPR017930Myb domain
SuperFamilySSF466891.72E-2812108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-211568IPR009057Homeodomain-like
CDDcd001674.65E-91661No hitNo description
PROSITE profilePS5129425.76862116IPR017930Myb domain
SMARTSM007174.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2569116IPR009057Homeodomain-like
CDDcd001675.74E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MRGNPSCCKK SFNKGSWSAT EDKILTDYVK AHGEGRWGKL PKSAGLNRCP RSCRLRWLNY  60
LRPDIKRGNI SHEEEDLIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT VLRKKVKACS  120
VGSKKIMHSD KDEDRSSKSQ EKVICPEFEN STSCNDASVS SQHDDKNICK KESKKSVVSG  180
EIHLDTYFLG PEDCDPVMAS VIEESCTKHP LDIDFSEIFG DNLQKDMRIW GIVDAPEPPD  240
DIMLFSNGIS DSWFNGDDIQ LYGGINLESF TTLFPSESEF LGLLWECLQH IPCSNREVIW  300
LKGKTQKDHV RSSTPCQLDS QNSLDYKGTS MTIQKPQRQP HQGSKPKHAN ARIPFTTQKY  360
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403151.10.0PREDICTED: transcription factor WER-like
TrEMBLM0T3K10.0M0T3K1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-55MYB family protein