PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 369aa    MW: 40853.9 Da    PI: 5.3224
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.8e-30216274259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             Dg++WrKYGqK+ kg+++pr+YYrCt + gCpv+k+v+r+ ed +++++tYeg+H+h+
  GSMUA_Achr6P02330_001 216 TDGCQWRKYGQKVAKGNPCPRAYYRCTVTpGCPVRKQVQRCLEDMSILVTTYEGTHDHP 274
                            7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-31200276IPR003657WRKY domain
SuperFamilySSF1182907.85E-27209276IPR003657WRKY domain
PROSITE profilePS5081128.219210276IPR003657WRKY domain
SMARTSM007744.0E-36215275IPR003657WRKY domain
PfamPF031065.1E-26217274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MQIDLSLEAA EDEERAVEEG EDGGRLVEEE EEDKEEDSHR EENQKPVDMI KHEVISLVLC  60
SSLLLRVMIW LLELMQLCML QSELDRVKEE NKMLRAVVDR SRKSYYELRM RFRDILQQEQ  120
LKVSLSLGAE SSQDPKMVVA DRGIDSDDAT ELSLSLSLQT HADPHERVDA RAEKGKGSKS  180
SAPLQDAAMI TSHSINPATR RTRVSVRARC EGPTMTDGCQ WRKYGQKVAK GNPCPRAYYR  240
CTVTPGCPVR KQVQRCLEDM SILVTTYEGT HDHPLPVAAT ALASTAAEAA ANHMPMNLAD  300
SSSSIVGSIP NRVPSASFSS YLANSSPNLP TMDGLATSTS YSSSIFGGGI SHGYPHWSNF  360
GSKEWGKYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22202276174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683071.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLM0T3I10.0M0T3I1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.18e-52WRKY DNA-binding protein 9