PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P02170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 231aa MW: 25226.3 Da PI: 8.5032 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.1 | 1.5e-31 | 49 | 101 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +Y+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaACgCHRnFHRre+e GSMUA_Achr6P02170_001 49 KYRECLKNHAVGIGGHAVDGCGEFMTA-GEEGTLDALRCAACGCHRNFHRREEE 101 8*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.2E-29 | 49 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.7E-30 | 49 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.068 | 50 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-19 | 52 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.05E-17 | 162 | 229 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-29 | 165 | 231 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.2E-23 | 168 | 224 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDFDEHDEGI EEMALPVGSR GESASATAGM AMRGSGHRKT YGGRGGRGKY RECLKNHAVG 60 IGGHAVDGCG EFMTAGEEGT LDALRCAACG CHRNFHRREE EGGGAGGGAT EVIGYHPQFS 120 PYNRAPGGYF HPHHSTAAAL ARDEQEETPI PMVGVGGGVG RRGGVVARKR FRTKFTQEQK 180 EKMLAFAEWL GWRIQRHDEA AVQKFCEETC VKRHALKVWM HNNKHTLGKK H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-25 | 169 | 226 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403138.1 | 1e-125 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 1e-75 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | M0T3G5 | 1e-168 | M0T3G5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P02170_001 | 1e-169 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-60 | homeobox protein 22 |
Publications ? help Back to Top | |||
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