PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02170_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 231aa    MW: 25226.3 Da    PI: 8.5032
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.11.5e-3149101558
            ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                            +Y+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaACgCHRnFHRre+e
  GSMUA_Achr6P02170_001  49 KYRECLKNHAVGIGGHAVDGCGEFMTA-GEEGTLDALRCAACGCHRNFHRREEE 101
                            8*************************9.999********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-2949100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.7E-304999IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.0685099IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-195298IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.05E-17162229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-29165231IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-23168224IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDFDEHDEGI EEMALPVGSR GESASATAGM AMRGSGHRKT YGGRGGRGKY RECLKNHAVG  60
IGGHAVDGCG EFMTAGEEGT LDALRCAACG CHRNFHRREE EGGGAGGGAT EVIGYHPQFS  120
PYNRAPGGYF HPHHSTAAAL ARDEQEETPI PMVGVGGGVG RRGGVVARKR FRTKFTQEQK  180
EKMLAFAEWL GWRIQRHDEA AVQKFCEETC VKRHALKVWM HNNKHTLGKK H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-251692261875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403138.11e-125PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotQ6YXH51e-75ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLM0T3G51e-168M0T3G5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02170_0011e-169(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-60homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]