PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr6P01420_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | RAV | ||||||||
Protein Properties | Length: 316aa MW: 35427.1 Da PI: 9.71 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 54 | 95 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++a GSMUA_Achr6P01420_001 54 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDA 95 78****9888.8*********3.....5**********99******98 PP | |||||||
2 | B3 | 99.9 | 1.6e-31 | 141 | 245 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae+h + ++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++L++gD+++F GSMUA_Achr6P01420_001 141 FDKAVTPSDVGKLNRLVIPKQHAEKHfplqqtSDAACKGLLLNFEDACGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKELRAGDVITF 228 89*************************88765333337889*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 +++ e +l+++ +r+ GSMUA_Achr6P01420_001 229 QRSTGPENQLFIGCRRR 245 *9877888899999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-13 | 54 | 105 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.91E-17 | 54 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-15 | 55 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-7 | 55 | 95 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.106 | 55 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-13 | 55 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-5 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-5 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 9.3E-41 | 137 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.15E-30 | 139 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-27 | 139 | 244 | No hit | No description |
SMART | SM01019 | 5.3E-24 | 141 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-28 | 141 | 245 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.17 | 141 | 246 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
METSGSEQVC SETEKQSPPP RPSPGGLLRL GSGTSVVLDP EVILEAKLRK LPSSQYKGVV 60 PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDAEIVDM LRKHTYYDEL QQSRRNSGAD 120 RSKPCPSHEE TFGRVYREHL FDKAVTPSDV GKLNRLVIPK QHAEKHFPLQ QTSDAACKGL 180 LLNFEDACGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKEL RAGDVITFQR STGPENQLFI 240 GCRRRSVGRY AAAGVHAPTT PVEAVRLFGV NIVKIPVAVS GGVMDGDGIG WNGKRSRDMG 300 LISSRELFKR QSTQAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-55 | 138 | 254 | 11 | 126 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402997.2 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-109 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | M0T390 | 0.0 | M0T390_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P01420_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 4e-98 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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