PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P01270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 336aa    MW: 36923 Da    PI: 6.676
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P01270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.45.2e-2378122145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCs+++ + + +CErH+hrgr+rsrk++e+
  GSMUA_Achr6P01270_001  78 DPEPGRCRRTDGKKWRCSKDAHPESRYCERHMHRGRNRSRKPVES 122
                            79****************************************986 PP
2QLQ44.93.6e-161549236
                    QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                           +FTa+Ql++L+ Q+l++K+++ ++PvPpeLl+ ++
  GSMUA_Achr6P01270_001 15 PFTASQLEELRVQVLIFKHILMGVPVPPELLLLVR 49
                           9******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.3E-101450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.4031550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-131548IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.60478122IPR014977WRC domain
PfamPF088792.1E-1979121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNNTAAAAAI EGRPPFTASQ LEELRVQVLI FKHILMGVPV PPELLLLVRR SLEAMAARLY  60
QHPASSDGHC SYFGKKFDPE PGRCRRTDGK KWRCSKDAHP ESRYCERHMH RGRNRSRKPV  120
ESQPVAPSQS ASTVISLAPS GSGGSDSKSI PMHPGTGAQV PFSGGMSCFQ LQPGTGSHET  180
GSKEFRYPYG DKSEAGEHGF FPEVSGSARG LEMDFPLDSS WGLMPSQMPN ALGFESNYLQ  240
LPAFNDLGQV TVSSLAKQDQ SQHSFFGNEF GSEEPVKQSQ ELRPFFDEWP KTRGPWSDLE  300
DERSNRSSFS TTQLSISIPV TSSDFSTSSS RSPIDD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402977.20.0PREDICTED: growth-regulating factor 4-like
SwissprotQ6AWY65e-89GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLM0T3750.0M0T375_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P01270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-30growth-regulating factor 5