PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P00960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 313aa    MW: 35823.2 Da    PI: 4.6222
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P00960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34361262101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+++++ed+e++ ++sws+  nsf+v+d+++fa  +LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF++  F  g
  GSMUA_Achr6P00960_001  36 FLSKTFDMVEDPETDAVVSWSRARNSFIVWDSHKFAIALLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANADFLGG 114
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +k+ll++ikr++
  GSMUA_Achr6P00960_001 115 RKHLLKNIKRRR 126
                            **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-3332125IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.1E-3732125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5632125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-193659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.5E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MENAVLMVKE EEEEEGEAMA APQPLTGLDE VGPTPFLSKT FDMVEDPETD AVVSWSRARN  60
SFIVWDSHKF AIALLPKYFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANAD FLGGRKHLLK  120
NIKRRRGADR LRRDRNVMML EIVKLRQRQQ SSRAQLVEME RRMQGTERRQ QRTMAFLARA  180
LKSPTFIREL VLRGQQQRQL GGAGKKRRLP ANPSSKDLLE LAISSEIDSV SLSSTETDGA  240
TPEPVDQSTA AISDLTWEEL LNESILMEGD EEEGEHSEVE AEAEDLESAA EQLEWEEDMK  300
DLVIQMDYMN SNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-262612516129Heat shock factor protein 1
5d5v_B7e-262612516129Heat shock factor protein 1
5d5v_D7e-262612516129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKNIKRR
2129134RLRRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402936.10.0PREDICTED: heat shock factor protein HSF30-like
TrEMBLM0T3440.0M0T344_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P00960_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-67heat shock transcription factor A2