PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P00900_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 503aa    MW: 55988.3 Da    PI: 7.0547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P00900_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-10322366554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h + Er+RR+++N++f+ Lr llP+       K +Ka++L  + +Y++ L
  GSMUA_Achr6P00900_001 322 HMISERKRREKLNESFDALRMLLPPV-----SKKDKASVLYNTRNYLNAL 366
                            8899*********************6.....4999***********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.09E-11315371No hitNo description
SuperFamilySSF474591.7E-15316384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.18317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-13321385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8322366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-12323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDTVFLLRPE ARSRFLRTAA RALGCTYICL WSPLYHPSSD CFTSMDGWHH EDDSSGRPSS  60
SSGSPSRRLF AAYLRSLCSI RCSCVPGWAF KSSLPYIELK DSDLMNSASM QVQRQFYQEA  120
GIKTAAFLGC TSGEIEFGMT TSSDANMHAN VDQVFSEDFI RQSQLEQEFI HQTQLEELFP  180
PPDSSDSSSL RSFSVESPEC SSLLLANTST VAPHQIPMSV YDRHRTVLFP STAVDDAAIA  240
RAMLAVISSN SSSAANRSWS GRRVGAFKAY ATPAFAPRCD PTPSSHGQKM IKMLINLLKK  300
MNDMRFEART QDARPTSNQL HHMISERKRR EKLNESFDAL RMLLPPVSKK DKASVLYNTR  360
NYLNALKAQI SELERRNRLL EMQVRRPDEK EEDGDSNERV RVQISRQATE STPEGEGVNL  420
VITVRAGCNM IDLIHDVLQC LKRMGATTLL SVEAITGSPQ KNDLIKASFT VRVKGADCDE  480
ETLEEAVTQA VAAVLERSAT PTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325330ERKRRE
2326331RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402924.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLM0T3380.0M0T338_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P00900_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-36bHLH family protein