PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P00240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 172aa    MW: 18533.1 Da    PI: 9.4988
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P00240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.7e-21959256
                    AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                           +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a+++a+++l+g+
  GSMUA_Achr6P00240_001  9 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDRAARSLRGA 59
                           7********.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-36972IPR001471AP2/ERF domain
PROSITE profilePS5103222.827966IPR001471AP2/ERF domain
CDDcd000184.93E-31968No hitNo description
SuperFamilySSF541715.62E-23967IPR016177DNA-binding domain
PfamPF008473.7E-14958IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-32966IPR001471AP2/ERF domain
PRINTSPR003674.9E-111021IPR001471AP2/ERF domain
PRINTSPR003674.9E-113248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGSRGDGHHY RGVRKRPWGR YAAEIRDPWK KTRVWLGTFD TPEEAALAYD RAARSLRGAK  60
AKTNFPYHHT SAPPPLHLPP SATLDLNLPC HCWLVPAPPQ AVPPSPPPPP STALVLGSFA  120
LYDPAKTPSP EARNAAAPDT PASSSASLFR DVGRDLLLDL NEPPPASSLL IG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-24773370ATERF1
3gcc_A9e-24773370ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946501e-47FP094650.1 Phyllostachys edulis cDNA clone: bphylf047i23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402848.11e-120PREDICTED: ethylene-responsive transcription factor 12-like
TrEMBLM0T2X21e-118M0T2X2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P00240_0011e-119(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-34ERF domain protein 12