PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P00130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 574aa    MW: 64503.3 Da    PI: 6.6734
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P00130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.8e-12108148445
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
  GSMUA_Achr6P00130_001 108 WNADEEILLLEGIEMYGLGNWTEVAEHVG-TKSKAQCIDHYT 148
                            *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250249.9E-16935570IPR016827Transcriptional adaptor 2
SMARTSM002912.4E-104489IPR000433Zinc finger, ZZ-type
PfamPF005693.0E-94688IPR000433Zinc finger, ZZ-type
SuperFamilySSF578502.35E-1448111No hitNo description
PROSITE profilePS5013510.6214891IPR000433Zinc finger, ZZ-type
CDDcd023356.49E-264896No hitNo description
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.72E-12101154IPR009057Homeodomain-like
PROSITE profilePS5129322.231103155IPR017884SANT domain
SMARTSM007175.8E-11104153IPR001005SANT/Myb domain
PfamPF002497.0E-12107148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-8108149IPR009057Homeodomain-like
CDDcd001671.84E-11108149No hitNo description
SuperFamilySSF466892.87E-21473562IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MGRSRAVPNS GDDDTSHRSK RRRVAASGEA LGNIEAGSGT SEGKKALYHC NYCNKDISGK  60
IRIKCTKCAD FDLCVECFSV GAEVTPHKSN HPYRVMDNLS FPLICPDWNA DEEILLLEGI  120
EMYGLGNWTE VAEHVGTKSK AQCIDHYTTS YLNSPCYPLP DMSRVNGKNR KELLAMAKVQ  180
VEGKKGSSLL GDVTPKEESP FSPARVKVED IGEGAANQSP SNLAAGASKV TSNTGKFKDN  240
PDGPKVEDSY LDRTIGVKKP KCSGEEGPSI TESGYNPKRQ EFDPEYDNDA EQALADMEFK  300
ENDTETEREL KLRVLRIYLS RLDERKRRKD FILERNLLYP NPLEKELSSE DRELYNRFKV  360
FMRFLSQEEH ENLVKSVIEE RKIRRRIQEL QECRAAGCRT LAEAKAYTEQ KRKRELEVGA  420
QNSKENTQIL SGGKVAQKAN RPLNREKGDN DGSPRNTTDN HKIKGSTGFE SSGKDSPSTT  480
TGQVSVRSFD EWDITGLPGT EFLSETEQDF CCQNRLLPSH YLKMQETLVQ EIYKGNIINK  540
SDAHGLFKVD PVKVDKVYDI VKRKLGQQEE STIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C1e-34481635120Transcriptional adapter 2
6cw3_E1e-34481635120Transcriptional adapter 2
6cw3_G1e-34481635120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2324329RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402837.10.0PREDICTED: transcriptional adapter ADA2 isoform X2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLM0T2W10.0M0T2W1_MUSAM; Transcriptional adapter
STRINGGSMUA_Achr6P00130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]