PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P29390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 233aa    MW: 25980.3 Da    PI: 7.1041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P29390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-144993554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           h+e+ErrRR+riN  +++Lr+++P++     +K++Ka+ L ++v+++k+L
  GSMUA_Achr5P29390_001 49 HSEAERRRRERINAHLSTLRRMIPNS-----TKMDKASLLGRVVDHLKDL 93
                           9************************9.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5774493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-144797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-144996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-114993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-145099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.31E-55795No hitNo description
Gene3DG3DSA:3.30.70.2607.2E-6144192No hitNo description
SuperFamilySSF550211.69E-6144203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAECFASSSW SEEGRDGSSC SSLMAPLRLL PGQAKPASEA RDSAALRIHS EAERRRRERI  60
NAHLSTLRRM IPNSTKMDKA SLLGRVVDHL KDLKRRALDV DGTIAIPAEV NEVDVEFDAG  120
HQHAFPEEEE EEGDDDDKLY IKASVCCDDR PDLLEELSDA FRRLGLRAVR ADMMTLGGRS  180
RNVFVLFLKD GDRSVCLSSL NRSIRETLGR VASSGAPQSN VFVSRRRKAM RSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERRRRE
28995LKDLKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402228.11e-168PREDICTED: transcription factor bHLH30-like
RefseqXP_018682247.11e-168PREDICTED: transcription factor bHLH30-like
TrEMBLM0T2R31e-166M0T2R3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P29390_0011e-167(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.13e-28basic helix-loop-helix 32