PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P28940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 304aa    MW: 34059 Da    PI: 9.7405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P28940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.71.1e-123078248
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                           g WT+eE +++  a +++ ++   +W+++a+ ++ g+t+ ++ s+++++l
  GSMUA_Achr5P28940_001 30 GTWTPEENKRFEYALAKFDKEtpdRWERVAASLP-GKTPRDVESHYRNLL 78
                           89*****************99*************.*************96 PP
2Myb_DNA-binding44.73.2e-14134178347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+++++ + +++G+g+W+ I+r +  +Rt+ q+ s+ qky
  GSMUA_Achr5P28940_001 134 PWTEEEHKRFLLGLRKYGKGDWRNISRNFVITRTPTQVASHAQKY 178
                            8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.362782IPR017884SANT domain
SMARTSM007179.2E-122880IPR001005SANT/Myb domain
PfamPF002491.5E-102978IPR001005SANT/Myb domain
SuperFamilySSF466894.38E-133085IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-83079IPR009057Homeodomain-like
CDDcd001678.58E-103178No hitNo description
PROSITE profilePS5129418.769127183IPR017930Myb domain
SuperFamilySSF466892.44E-17129183IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-18130181IPR006447Myb domain, plants
SMARTSM007172.4E-12131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-12131177IPR009057Homeodomain-like
PfamPF002491.3E-12134178IPR001005SANT/Myb domain
CDDcd001671.50E-10134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEVLPPTTPC YPGSSLFLGE RRSRGWSGTG TWTPEENKRF EYALAKFDKE TPDRWERVAA  60
SLPGKTPRDV ESHYRNLLND VKQIEAGRIP CPGYDSSSFS LDWESFEVLK QSYCVGGRRS  120
GARASDQERK KGVPWTEEEH KRFLLGLRKY GKGDWRNISR NFVITRTPTQ VASHAQKYFI  180
RLNSGGKDKR RSSIHDITTA NLPDNRPPSP SQPSSLTSQP CSAPAPIWSS PYSSIHDTNP  240
PDEATGTFSS SAQVSQIMQA RYGVAAYGLK LEAHAPQSGT LRDPLVNDHN LLFRMQSSRH  300
LPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-16321101191RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402284.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H76e-98DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0T2L80.0M0T2L8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P28940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-83MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]