PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P28780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 397aa    MW: 43801.5 Da    PI: 7.427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P28780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-182166147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  GSMUA_Achr5P28780_001 21 KGPWSPEEDVILSRLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 66
                           79******************************.***********985 PP
2Myb_DNA-binding55.41.5e-1773117147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            r ++T+eEd +++ a++ +G++ W++Iar +  gRt++ +k++w++ 
  GSMUA_Achr5P28780_001  73 RRPFTEEEDRIIIAAHAIHGNK-WASIARLLE-GRTDNAIKNHWNST 117
                            679*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.0841667IPR017930Myb domain
SuperFamilySSF466899.71E-3118114IPR009057Homeodomain-like
SMARTSM007171.2E-152069IPR001005SANT/Myb domain
PfamPF002494.0E-172166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-262274IPR009057Homeodomain-like
CDDcd001676.09E-142365No hitNo description
PROSITE profilePS5129426.27268122IPR017930Myb domain
SMARTSM007178.5E-1772120IPR001005SANT/Myb domain
PfamPF002496.5E-1573117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2375121IPR009057Homeodomain-like
CDDcd001674.57E-1275118No hitNo description
PROSITE profilePS5129218.634266332IPR011016Zinc finger, RING-CH-type
Gene3DG3DSA:3.30.40.102.7E-15269328IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578506.48E-11272328No hitNo description
SMARTSM007442.0E-14273326IPR011016Zinc finger, RING-CH-type
PfamPF129062.7E-9274325IPR011016Zinc finger, RING-CH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLEGPASGGG GGGAAVEDRV KGPWSPEEDV ILSRLVSKFG ARNWSLIARG IPGRSGKSCR  60
LRWCNQLDPY VKRRPFTEEE DRIIIAAHAI HGNKWASIAR LLEGRTDNAI KNHWNSTLRR  120
RFPLDQVVEA EEWLFWQGRG YVHLGTADVC FYLRPPPPPY SSSLPSLSPF GPTASCWYIP  180
MISLSLSLSL SCLPHLMHLP PQVRWVPYVS RGMAEATRSS DSKEEPNHSV VSVHDRDGSS  240
PQPRTNSSGS PSSPEVDPES GLSVNPERKA ARECRICYLA LENSASESGP PIVLGCSCKH  300
DLAVAHERCA QTWFEAKGNR ICEICGSTAK NVVASGDAAS TEQMNEGDDP AMAPAQPSSS  360
SSSDRSLWRR QCFLNFLLTF LVFLCAFSWL YHYNLPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-40151211107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0T2K20.0M0T2K2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P28780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-57myb domain protein 109