PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P28050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 266aa    MW: 29621.4 Da    PI: 4.332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P28050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-181262155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a++ a+++++g
  GSMUA_Achr5P28050_001 12 CRYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTAVQAALAYDDAARAMYG 62
                           78*****999.**********8...2.359**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-121262IPR001471AP2/ERF domain
CDDcd000188.68E-291270No hitNo description
Gene3DG3DSA:3.30.730.107.7E-301370IPR001471AP2/ERF domain
SMARTSM003802.8E-331376IPR001471AP2/ERF domain
PROSITE profilePS5103221.5491370IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-201370IPR016177DNA-binding domain
PRINTSPR003671.6E-91425IPR001471AP2/ERF domain
PRINTSPR003671.6E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRGKGGPENR SCRYRGVRQR TWGKWVAEIR EPNRGNRLWL GTFPTAVQAA LAYDDAARAM  60
YGTSARINLP GVVRRDSSES TTTLHHSDAI GASVSSADQI KFLITKLKDE AHSDRMNVSG  120
SRESIIEFPT VELEDEGGRN EEPSFVADAC NVELYQSDAP EGEFSIEDML RIMGADTDNS  180
DADHFGAVGR ETNWQCTDPV DMSLDVRHTD APTVWDIEQN PFDYSDTLLR SLGEDWEYGP  240
GETPNTVDFG ISCADLLSSP ERWYKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-161470360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402398.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like isoform X1
RefseqXP_009402399.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like isoform X2
TrEMBLM0T2C90.0M0T2C9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P28050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-27ERF family protein