PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P27750_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 28657.3 Da PI: 9.2017 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.9e-16 | 22 | 67 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v ++G+ +W+ Ia+++ gR++k+c++rw++ GSMUA_Achr5P27750_001 22 RGHWRPAEDAKLKELVSLYGPQNWNMIAEKLV-GRSGKSCRLRWFNQ 67 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.5e-18 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+++l+ a++ +G++ W++Iar ++ gRt++ +k++w+ GSMUA_Achr5P27750_001 74 RKAFSEEEEDRLLAAHRVYGNR-WALIARLFP-GRTDNAVKNHWHV 117 789*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.104 | 17 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 21 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-13 | 21 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.2E-15 | 22 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 23 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-12 | 25 | 66 | No hit | No description |
PROSITE profile | PS51294 | 26.365 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 74 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.36E-12 | 76 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 76 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEEGGGYGNS FESERQQKLC VRGHWRPAED AKLKELVSLY GPQNWNMIAE KLVGRSGKSC 60 RLRWFNQLDP RINRKAFSEE EEDRLLAAHR VYGNRWALIA RLFPGRTDNA VKNHWHVIMA 120 RKQREKQSST YRRRKRPSLR YPPSQPLPRW EEVTTTCNNA CSGESTTTRE ETASTCTDLY 180 LGSVTVPNGF RIGAPTMQVR GFDLSVCTGT TFEVTANEPA AYHMTNALPS GETTYEKEKI 240 SLPFFDFLGV GA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-33 | 20 | 122 | 5 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 136 | RKQREKQSSTYRRRKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402430.1 | 0.0 | PREDICTED: trichome differentiation protein GL1-like isoform X2 | ||||
Swissprot | Q5NBM8 | 1e-70 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | M0T2A0 | 0.0 | M0T2A0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P27750_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-71 | myb domain protein 105 |