PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P26790_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NF-YC | ||||||||
Protein Properties | Length: 224aa MW: 24214.3 Da PI: 4.9639 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45 | 2.3e-14 | 79 | 116 | 1 | 35 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 ql++fw++q ie+ tdfknh+lPlarikki+kaded GSMUA_Achr5P26790_001 79 QLQAFWANQmleIEQITDFKNHSLPLARIKKIMKADED 116 89*******8889************************9 PP | |||||||
2 | NF-YC | 35.7 | 1.8e-11 | 115 | 148 | 69 | 102 |
NF-YC 69 nkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +rrtl+k+di a+trtdifdflvdivprdelk GSMUA_Achr5P26790_001 115 EDRRTLQKNDIGGAITRTDIFDFLVDIVPRDELK 148 579****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.09E-11 | 74 | 138 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.7E-8 | 95 | 117 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.2E-6 | 118 | 144 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEQSTQPEIG VVSGAAQIAY AAPTYQPTAV ISGAPAVAGV IPSPMQLTSA YSINPASIVS 60 QHQLAYQQVQ QLHHQQLQQL QAFWANQMLE IEQITDFKNH SLPLARIKKI MKADEDRRTL 120 QKNDIGGAIT RTDIFDFLVD IVPRDELKDE GLGITRAAVG APGGDAIPYY YVPAAQVPGP 180 GMVMGKPGDQ AAAGTVYAVE QPHSVAYLWQ PPHAQQHEQV PDGE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402538.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_009402539.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_009402541.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_009402542.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_009402543.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_018681286.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 6e-53 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | M0T204 | 1e-161 | M0T204_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P26790_001 | 1e-161 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 4e-39 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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