PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P26640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 299aa    MW: 33339.8 Da    PI: 8.2804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P26640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.86.1e-51111381128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrFhP+deelv++yL kkv+g+   + +  ++ +vd++k+ePw+Lp+ +  + kewyfFs  d+kyatg+r+nrat+sgyWkat
  GSMUA_Achr5P26640_001  11 LPPGFRFHPRDEELVCDYLMKKVSGDGslCGC-PAMIDVDLNKCEPWHLPEVACVGGKEWYFFSLPDRKYATGRRTNRATESGYWKAT 97 
                            79***********************9953333.5699*************7666789******************************* PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd++v + +g lvg++ktLvfy+grap+g+kt+Wv+he+r+
  GSMUA_Achr5P26640_001  98 GKDRQVSR-RGVLVGMRKTLVFYRGRAPRGRKTEWVIHEFRM 138
                            ******99.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-603161IPR003441NAC domain
PROSITE profilePS5100554.79511161IPR003441NAC domain
PfamPF023657.1E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSFLSMVEAR LPPGFRFHPR DEELVCDYLM KKVSGDGSLC GCPAMIDVDL NKCEPWHLPE  60
VACVGGKEWY FFSLPDRKYA TGRRTNRATE SGYWKATGKD RQVSRRGVLV GMRKTLVFYR  120
GRAPRGRKTE WVIHEFRMAA SGDPHEFSLK EDWVLCRAFH KSRGVTSDPV ATEAGDDDTP  180
SSSLPPLMDN HSTFQQALPS SEGYQQVSCF SNLSPHTAPQ ATSAPPPISM VERSLQTISS  240
PRMGGLLDMG YSDKVILSAL NHRTKSEGDP WREVPPSIAS RILGSYISGN GSPYMWNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47616212166NO APICAL MERISTEM PROTEIN
1ut4_B1e-47616212166NO APICAL MERISTEM PROTEIN
1ut7_A1e-47616212166NO APICAL MERISTEM PROTEIN
1ut7_B1e-47616212166NO APICAL MERISTEM PROTEIN
3swm_A1e-47616215169NAC domain-containing protein 19
3swm_B1e-47616215169NAC domain-containing protein 19
3swm_C1e-47616215169NAC domain-containing protein 19
3swm_D1e-47616215169NAC domain-containing protein 19
3swp_A1e-47616215169NAC domain-containing protein 19
3swp_B1e-47616215169NAC domain-containing protein 19
3swp_C1e-47616215169NAC domain-containing protein 19
3swp_D1e-47616215169NAC domain-containing protein 19
4dul_A1e-47616212166NAC domain-containing protein 19
4dul_B1e-47616212166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402564.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE68e-84NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLM0T1Y90.0M0T1Y9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P26640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.23e-86NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]