PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P26580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 807aa    MW: 89945.4 Da    PI: 6.9594
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P26580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.4e-24128229199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        +++++  ++lt +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  GSMUA_Achr5P26580_001 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldflQQPPA--QELTAKDLHGNEWRFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 213
                            99*****************************7655554..58********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  GSMUA_Achr5P26580_001 214 FI--WNDNNQLLLGIRRA 229
                            **..7777778***9997 PP
2Auxin_resp1219.1e-40254337183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sd+dpv+WpnS+Wrs+k
  GSMUA_Achr5P26580_001 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDIDPVHWPNSHWRSVK 337
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100176.84E-23127228No hitNo description
PfamPF023624.1E-23128229IPR003340B3 DNA binding domain
SMARTSM010191.9E-25128230IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183128230IPR003340B3 DNA binding domain
PfamPF065078.5E-35254337IPR010525Auxin response factor
SuperFamilySSF542772.03E-7666748No hitNo description
PfamPF023092.2E-7670760IPR033389AUX/IAA domain
PROSITE profilePS5174521.226674758IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MRLSSSGPGN QQQEDTEEQV CLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEIDSLPSYP SLPPQLVCQL HNVTMHADVE TDEVYAQMTL QPLSLLEQKD PYLPAELGMP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFL QQPPAQELTA KDLHGNEWRF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDIDPVHWPN SHWRSVKVGW DESTAGQRQP RVSLWEIEPL  360
TTFPMYPTSF PFRLKRPWPT GLPSLHGGKD DGISLNLPQM LFQNGGNTGF QSLNFQDISV  420
TPWMRPRLDN PVLSLQPDMY QTMAVAGQKM RIVDTTKNVS PGMLQFQQTQ NITSRTSPIV  480
PSQVLQHGHS QTPQTFLQNL QVNQQQVPRQ HQTQIQQQKI LSNHQKNISS FSQPQNFPDS  540
NGNSVSTAIQ CMMPQVEQLG ASQPAISQHS VILSPFPRRQ YVVDQDGNMD GQNHLLFGVN  600
IDSSSLLVQN GMSNLGHLSN ETDSMNMHYA ASNLVGSSGN DFGLNQAFTV SNGLEPPGLL  660
QAPGNMDSLN QSSGTFVKVY KSGSCGRSLD ITKFSSYHEL RSELGRLFGL EGQLEDPLRS  720
GWQLVFVDRE NDILLVGDDP WQEFVNNVWC IKILMRQEVQ QMGKPSADFL NTAHSKRLPS  780
NSCDEYITRQ DSRSLSTVTA SVGTLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561135841388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402570.10.0PREDICTED: auxin response factor 6 isoform X1
RefseqXP_009402571.10.0PREDICTED: auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLM0T1Y30.0M0T1Y3_MUSAM; Auxin response factor
STRINGGSMUA_Achr5P26580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]