PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P26530_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 24463.2 Da PI: 9.5861 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.3 | 1e-23 | 19 | 65 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ rqv fskRr+g++KKA ELSvLC+ae+a+++fs+ gk + GSMUA_Achr5P26530_001 19 KRIENEEARQVCFSKRRAGLFKKATELSVLCGAEIALVVFSPAGKPF 65 79*****************************************9855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.964 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-29 | 11 | 81 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-36 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.59E-40 | 12 | 80 | No hit | No description |
PRINTS | PR00404 | 3.3E-22 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-27 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-22 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-22 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MIPPRKKKTS MGRQRIEIKR IENEEARQVC FSKRRAGLFK KATELSVLCG AEIALVVFSP 60 AGKPFSFGHP SVDSVVGRFL SGGAAPTPTP VVDHRMVPAR ASLVHELDRQ YLELGERLAA 120 ERARKDALEA ALRGRWGSTA GLLDANLEEI GLVELERLRE ALERLRWDVA MRVNQLVIEV 180 QTRSVVMAGD AAAGGFVGGF LAAAEEGVVA LPPQHGFSYG YGGIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402798.2 | 1e-153 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M0T1X8 | 1e-160 | M0T1X8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P26530_001 | 1e-161 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-33 | AGAMOUS-like 62 |