PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P24660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 710aa    MW: 80131.6 Da    PI: 8.2876
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P24660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-09595643348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            +WT  E  +lvd+v+++G g+W+ I r        Rt  ++k++w+++l
  GSMUA_Achr5P24660_001 595 AWTLCEIRKLVDGVAKYGAGRWSEIRRLSFasySYRTSVDLKDKWRNLL 643
                            7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.406588647IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-12589647IPR009057Homeodomain-like
SMARTSM007175.8E-9592645IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-15594653IPR009057Homeodomain-like
CDDcd116608.70E-17594644No hitNo description
PfamPF002494.8E-6595643IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MEHSEATIID TTSGKMKDDE QTNDKKICDS EPVVYQLVRV EGDGRLVPAT DDEVIEVEQL  60
LEVKKSDLAK VKAVGHDEQC ISNEVFSKSE LEGIELLTSC FPFEILSFVV LKLNARLENI  120
KVMLKKVKKE ERLLLSGESL NCSPKFMVME DSTSDRSNTS KACIDKHEPE NPSRERAASS  180
LELNSIHIVE VGTIEACSGP MNKAATSRSS ISESCSSLLP DFSILRGEIC LDNFSIRELQ  240
EAFRATFGRH TSVKDKLWLK RRIAMGLTNS CHVPTARFTI KDNKIILSDL KEPARLQQST  300
IETESLSMDI HATNVSPRDI KTCLNNQMEF QQVSGKRLGV LPSNDDVKDE NIQMEQCAAK  360
RMRKPTKRYI EELSDLETRE CTAKSYYSVN SEQSQFPSKA QIMPFHGGTH RRLSSTRHES  420
LRGFSFQVPF VLRARRGQPR KNLMALMEYH PNAISRIVKT AVMIPVLEED KENGSSSRET  480
RSVPVQMLNT IFFLPRCFIM AIGFWSQHKY TPNFVGPECV ECIFRKSQLA IFLQNLSYVK  540
SVAGEESVEM DCGTLNCEEL DPEHKKLDGI GDTACDNVPK QLAAKANVRR KHHRAWTLCE  600
IRKLVDGVAK YGAGRWSEIR RLSFASYSYR TSVDLKDKWR NLLRASLVQC PTEKEANNYR  660
KQTSIPIPAS ILSQVRELAK FHAQTGIKVS PRKSAGHGSS TVQREGYGFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402132.10.0PREDICTED: uncharacterized protein LOC103985999 isoform X1
RefseqXP_018682196.10.0PREDICTED: uncharacterized protein LOC103985999 isoform X1
TrEMBLM0T1E10.0M0T1E1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P24660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-85TRF-like 6