PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P24630_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 225aa MW: 24830.8 Da PI: 10.6778 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 266.8 | 1.1e-81 | 69 | 225 | 144 | 301 |
GAGA_bind 144 akekkkkkkrqrakkp.kekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229 ake++ kk++q +++p k +k kk+kk + ++k++++ + r +a kk++d+v+ng +lD+s++P+PvCsCtG+lrqCY+WG GG GSMUA_Achr5P24630_001 69 AKEAPLKKRSQAQARPcKPSKPKKPKKVP-TPKDETNGR--SgGRGRAIKKNTDIVINGFDLDISRIPTPVCSCTGTLRQCYRWGVGG 153 34444444444444441445555666643.443333333..3379******************************************* PP GAGA_bind 230 WqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 WqSaCCtt+iS+yPLP+stkrrgaRi grKmSqgafkk+LekLa+eGy+lsnp+DL+ +WAkHGtnkfvtir GSMUA_Achr5P24630_001 154 WQSACCTTSISMYPLPMSTKRRGARICGRKMSQGAFKKVLEKLAGEGYNLSNPIDLRPYWAKHGTNKFVTIR 225 ***********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 3.3E-6 | 1 | 46 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 5.3E-115 | 1 | 225 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.0E-81 | 66 | 225 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDGDGGMGMR NWAYYEQTLK GNLGLQLMSP VAAERESTKP LLSNGGFLRR DCDVAEPSVP 60 MGFMRNVTAK EAPLKKRSQA QARPCKPSKP KKPKKVPTPK DETNGRSGGR GRAIKKNTDI 120 VINGFDLDIS RIPTPVCSCT GTLRQCYRWG VGGWQSACCT TSISMYPLPM STKRRGARIC 180 GRKMSQGAFK KVLEKLAGEG YNLSNPIDLR PYWAKHGTNK FVTIR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | PKKPKKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402129.1 | 1e-131 | PREDICTED: protein Barley B recombinant-like | ||||
Swissprot | Q9SKD0 | 7e-69 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | M0T1D8 | 1e-166 | M0T1D8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P24630_001 | 1e-166 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 6e-68 | basic pentacysteine 2 |