PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr5P24060_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 384aa MW: 43733.7 Da PI: 4.9586 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g GSMUA_Achr5P24060_001 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARSIRG 164 69*******.**********954...4**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.13E-31 | 115 | 173 | No hit | No description |
SMART | SM00380 | 1.9E-38 | 115 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-22 | 115 | 174 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 115 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.96 | 115 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 116 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MCGGAIISDF VPAARSWRLV SEDVLWPDLK NGSKKKKKKK KKDGRRRAVE EAEDDFDALF 60 QEFNEEYGRS KNDEEVELVD HKHCAFPPKG GPISSRPIES DGPAARSPKR KRKNQYRGIR 120 QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDVEAR SIRGKKAKVN FPDEAPPSAQ 180 KHLMKSTAWE APTWNPEDSL NFNHNFNYVN DDNHDFFMTL DLFEEKEPIK HSKNMNSFTE 240 IELAPPSEEP RTRNVNTFSD HGSPTFGYSE YAWEQEVKYP YITTIVDPAN PEAENFVLLE 300 DGCLTKKLKN NAGEAVPAKE IDDVKLSKEL SAFESFMKLL QTPYLEGSSD EAIDSFLDCD 360 ATQGEDGVDL WSFDNLPPIA ETIY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 114 | 174 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 33 | 41 | KKKKKKKKK |
2 | 33 | 46 | KKKKKKKKKDGRRR |
3 | 35 | 41 | KKKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401312.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1 | ||||
TrEMBL | M0T181 | 0.0 | M0T181_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P24060_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-43 | related to AP2 12 |