PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P23620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 533aa    MW: 59747.6 Da    PI: 7.043
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P23620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.98.8e-4981341128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGf FhPtd el+++yLk+k+ g+k+++   i+e+diyk+ePwdLp+  ++ +++++w+fF  rd+ky++g+r+nrat++gyWk+t
  GSMUA_Achr5P23620_001   8 LPPGFGFHPTDVELISHYLKRKILGHKFDE--LIPELDIYKHEPWDLPAkcRLPTRDSKWHFFNLRDRKYPNGSRSNRATEEGYWKST 93 
                            79*************************877..8***************5356667999****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            g+d++v+  +++++g+kktLvf++gr p+g++tdW+mhey +
  GSMUA_Achr5P23620_001  94 GRDRNVKF-QNRVIGTKKTLVFHEGRPPRGKHTDWIMHEYYI 134
                            *******9.9999***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-556157IPR003441NAC domain
PROSITE profilePS5100554.6878157IPR003441NAC domain
PfamPF023653.6E-249133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDKLSASLPP GFGFHPTDVE LISHYLKRKI LGHKFDELIP ELDIYKHEPW DLPAKCRLPT  60
RDSKWHFFNL RDRKYPNGSR SNRATEEGYW KSTGRDRNVK FQNRVIGTKK TLVFHEGRPP  120
RGKHTDWIMH EYYIDEKECK AAPGLKDAFV LCRVTKRNGW QVEIEKIEPM GCKESSHSGE  180
IDDINAWVAE LFDPDFGAPV NDFNTPSTDF GTSSNMLEHE AEISQTDLRS LLPKQEPVDH  240
YLDQSAEGDL DYLLEGDIYN ILQSDSVLWE SNGTIDTAFT TESSSPDGNA GKENFTSFGH  300
NDTGIQIRPR RAGPAAELTS KKIRLQVSKM ESRGSASVNH TVKIDKEDRH LDLKKSHNTD  360
FSAFDQESAV GKLSVCFHRA DAKSNPSSGS NLPCSVASRS LLGARPATDV TLQKSTGALD  420
DASCIRGILR SLGMAVRALP SAGWNCFILS GCIIGIAALL ICLLLRDARG FLASFSSLWF  480
NWVLAWTSRI YITSLRSECL LLHICHLCNI SNVIHSESSI TYLRSCKQHL IFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-46716114173Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401362.10.0PREDICTED: NAC domain-containing protein 74
TrEMBLM0T1370.0M0T137_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P23620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-67NAC domain containing protein 57