PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P23290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 302aa    MW: 33955.1 Da    PI: 10.1758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P23290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-1681126147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W + Ed +l ++v+++G+ +Wk+Ia+ +  gR++k+c++rw++ 
  GSMUA_Achr5P23290_001  81 RGHWRPAEDSKLRRLVELYGPQNWKLIAENLK-GRSGKSCRLRWFNQ 126
                            899****************************9.***********996 PP
2Myb_DNA-binding53.36.2e-17133176146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++T++E+e+l  a++++G++ W+tIar ++ gRt++ +k+ w+ 
  GSMUA_Achr5P23290_001 133 RRPFTEQEEEKLMTAHRLHGNK-WATIARLFP-GRTDNAVKNQWHV 176
                            679*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.09176131IPR017930Myb domain
SMARTSM007173.3E-1480129IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2881174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-2682134IPR009057Homeodomain-like
PfamPF139213.4E-1684144No hitNo description
CDDcd001674.87E-1384125No hitNo description
SMARTSM007173.1E-14132180IPR001005SANT/Myb domain
PROSITE profilePS5129419.383132182IPR017930Myb domain
CDDcd001679.99E-11135175No hitNo description
Gene3DG3DSA:1.10.10.603.3E-21135181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASGWYADTS SSSSSKEVSS LFAGPTSSLE SCHYGRSSKR TCRTFPFMES CLGFQENPQE  60
NTEVAHVVGE DNPDGGKTCA RGHWRPAEDS KLRRLVELYG PQNWKLIAEN LKGRSGKSCR  120
LRWFNQLDPK INRRPFTEQE EEKLMTAHRL HGNKWATIAR LFPGRTDNAV KNQWHVIMAR  180
KYREQAVVHR RKKLGQHLHR RLGEAAAARH HFFPSIGLHR VAHSGEDAVS GTPFDFFSED  240
KKDQEKKSFN SNKTPISLAI QRSSHASHVS VNGRPFEGNK ESSHLDAVVS PALIDFLGVG  300
AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30791815107B-MYB
1gv2_A1e-30811814104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-30811814104C-Myb DNA-Binding Domain
1msf_C1e-30811814104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401409.10.0PREDICTED: transcription factor MYB23-like
TrEMBLM0T1040.0M0T104_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P23290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-65myb domain protein 105