PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P23240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 290aa    MW: 31757.4 Da    PI: 6.9373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P23240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.2e-191461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++++G+g+W++ +++ g+ R++k+c++rw +yl
  GSMUA_Achr5P23240_001 14 KGPWTPEEDQKLLAYIEKHGNGSWRALPAKAGLQRCGKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg ++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  GSMUA_Achr5P23240_001  67 RGEFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                            899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.191961IPR017930Myb domain
SuperFamilySSF466898.44E-3111108IPR009057Homeodomain-like
SMARTSM007172.9E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-171461IPR001005SANT/Myb domain
CDDcd001672.48E-111661No hitNo description
PROSITE profilePS5129425.22562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2665116IPR009057Homeodomain-like
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.9E-1667112IPR001005SANT/Myb domain
CDDcd001672.72E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE KHGNGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGEF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPCTHKAKS DTLSSGDGHL KSVANLSHMA QWESARLEAE ARLARESKFR AAAWPGANQG  180
DRIDLESPTS TLSFAAAGVG FVDAGAGAAS AASHQGGAPW LSEPYWGQSG AGFTGLLLGD  240
SAAQKASDCR EEEEEEVELE GEEESKNYWN SILNSVNSSS SSNSPPLFYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681702.11e-164PREDICTED: myb-related protein Myb4-like
SwissprotQ9LE631e-116MY106_ARATH; Transcription factor MYB106
TrEMBLM0T0Z90.0M0T0Z9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P23240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-92myb domain protein 106