PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P22460_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 391aa    MW: 43471.7 Da    PI: 5.3088
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P22460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06335436
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                           + C+ + e++   +C+++   lC +C  + H+ 
  GSMUA_Achr5P22460_001  3 HLCDFCTEQRSVVYCQSDAASLCLSCDRNVHSA 35
                           57***************************9954 PP

2CCT57.74.1e-20335378144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Re al+RYkeK+k+RkFeK++rY+ RKa+A+ R RvKGrFvk+ 
  GSMUA_Achr5P22460_001 335 RECALMRYKEKKKSRKFEKRVRYALRKARADIRRRVKGRFVKAG 378
                            899**************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.172147IPR000315B-box-type zinc finger
SMARTSM003363.3E-5147IPR000315B-box-type zinc finger
CDDcd000219.13E-6435No hitNo description
SMARTSM003361.14890IPR000315B-box-type zinc finger
PfamPF062032.3E-15335377IPR010402CCT domain
PROSITE profilePS5101715.001335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDHLCDFCTE QRSVVYCQSD AASLCLSCDR NVHSANALSL RHLRTLLCDQ CIVQPAVVRC  60
IEENKSLCGN CDRKVHGGLA VASEHNRHLI NCYSGCPSAA EFSRIWSFLE FLHMTDSDYE  120
QGFMITNEDS MTIDKCNLWK GSSSASEIPM CYSADQPPNP VNSTTPKSYC PETNDTGFSK  180
DDFDEGFTIG DVDMIFENYE ELFGAANKQT KDLFDDAGID SFYDRKKNSP ACSLCHGELA  240
AEASSAGQVK QMQIPCSDAV SADSVMSNPE EDPDCSPAFP ECKVQSSLSF SFSGVTGESN  300
AGDYQNCRKS DMLLMGKPPW YFAGSGSFSL PTSSRECALM RYKEKKKSRK FEKRVRYALR  360
KARADIRRRV KGRFVKAGDA YDYDPLSHIS C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3143450.0JQ314345.1 Musa acuminata AAA Group COL protein (COL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401491.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_009401492.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018681507.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
TrEMBLM0T0S10.0M0T0S1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P22460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-89CONSTANS-like 9