PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P22460_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | CO-like | ||||||||
Protein Properties | Length: 391aa MW: 43471.7 Da PI: 5.3088 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.3e-06 | 3 | 35 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ + e++ +C+++ lC +C + H+ GSMUA_Achr5P22460_001 3 HLCDFCTEQRSVVYCQSDAASLCLSCDRNVHSA 35 57***************************9954 PP | |||||||
2 | CCT | 57.7 | 4.1e-20 | 335 | 378 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re al+RYkeK+k+RkFeK++rY+ RKa+A+ R RvKGrFvk+ GSMUA_Achr5P22460_001 335 RECALMRYKEKKKSRKFEKRVRYALRKARADIRRRVKGRFVKAG 378 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.172 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.3E-5 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.13E-6 | 4 | 35 | No hit | No description |
SMART | SM00336 | 1.1 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.3E-15 | 335 | 377 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.001 | 335 | 377 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MDHLCDFCTE QRSVVYCQSD AASLCLSCDR NVHSANALSL RHLRTLLCDQ CIVQPAVVRC 60 IEENKSLCGN CDRKVHGGLA VASEHNRHLI NCYSGCPSAA EFSRIWSFLE FLHMTDSDYE 120 QGFMITNEDS MTIDKCNLWK GSSSASEIPM CYSADQPPNP VNSTTPKSYC PETNDTGFSK 180 DDFDEGFTIG DVDMIFENYE ELFGAANKQT KDLFDDAGID SFYDRKKNSP ACSLCHGELA 240 AEASSAGQVK QMQIPCSDAV SADSVMSNPE EDPDCSPAFP ECKVQSSLSF SFSGVTGESN 300 AGDYQNCRKS DMLLMGKPPW YFAGSGSFSL PTSSRECALM RYKEKKKSRK FEKRVRYALR 360 KARADIRRRV KGRFVKAGDA YDYDPLSHIS C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ314345 | 0.0 | JQ314345.1 Musa acuminata AAA Group COL protein (COL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401491.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_009401492.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_018681507.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | M0T0S1 | 0.0 | M0T0S1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P22460_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-89 | CONSTANS-like 9 |