PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P21910_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 28166.5 Da PI: 10.4281 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.4 | 6e-28 | 186 | 251 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EE.......EEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprs.......YYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+ YY+C++ gCp++k+ver+ +dp+++++tYegeH+h+ GSMUA_Achr5P21910_001 186 ADEYSWRKYGQKPIKGSPYPRQglvlrtgYYKCSTLrGCPARKHVERAPDDPSMLIVTYEGEHRHS 251 69*******************55555555****9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 9.5E-18 | 135 | 183 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 7.0E-30 | 174 | 251 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.175 | 180 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-23 | 182 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-35 | 185 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-23 | 187 | 250 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAVDLVGYTK MDDRIAIQEA TAAGLRSMEH LIRHLSNPHR HQQQQLDCHE IADFAISKFK 60 KVIAILDGTG HARFRRGPVA PVPLAEPSLP AAAKSLTLAP IPLRLPPPTR YGKEYFSISM 120 PMTSATSSFV SSVTRDCSHS HAHSDHVAGK NAVPGTRCHC SKRRKPRVKR TIRVPAVGLK 180 AADIPADEYS WRKYGQKPIK GSPYPRQGLV LRTGYYKCST LRGCPARKHV ERAPDDPSML 240 IVTYEGEHRH SAAAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 183 | 250 | 12 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401557.1 | 1e-167 | PREDICTED: WRKY transcription factor WRKY51-like | ||||
Refseq | XP_009401558.1 | 1e-167 | PREDICTED: WRKY transcription factor WRKY51-like | ||||
Refseq | XP_018681403.1 | 1e-167 | PREDICTED: WRKY transcription factor WRKY51-like | ||||
Refseq | XP_018681404.1 | 1e-167 | PREDICTED: WRKY transcription factor WRKY51-like | ||||
Refseq | XP_018681405.1 | 1e-167 | PREDICTED: WRKY transcription factor WRKY51-like | ||||
Refseq | XP_018681406.1 | 1e-167 | PREDICTED: WRKY transcription factor WRKY51-like | ||||
Refseq | XP_018681407.1 | 1e-167 | PREDICTED: WRKY transcription factor WRKY51-like | ||||
Swissprot | Q9SV15 | 3e-83 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | M0T0L6 | 0.0 | M0T0L6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P21910_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 5e-82 | WRKY DNA-binding protein 11 |