PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P21250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 321aa    MW: 35502.7 Da    PI: 5.2982
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P21250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +grW++eEde+lv++++  G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr5P21250_001 14 KGRWSAEEDEILVKYIAANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                           79******************************99************97 PP
2Myb_DNA-binding574.5e-1867112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE+e++v++++ lG++ W++Ia +++  Rt++++k++w+++l
  GSMUA_Achr5P21250_001  67 RGNFTKEEEEIIVKLHATLGNR-WSLIAGHLP-ARTDNEIKNYWNSHL 112
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.174961IPR017930Myb domain
SuperFamilySSF466894.9E-2811108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002491.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-211568IPR009057Homeodomain-like
CDDcd001675.24E-91661No hitNo description
PROSITE profilePS5129425.68362116IPR017930Myb domain
SMARTSM007173.5E-1666114IPR001005SANT/Myb domain
PfamPF002494.3E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2669116IPR009057Homeodomain-like
CDDcd001671.23E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRAPCCAKV GLKKGRWSAE EDEILVKYIA ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSGLKRGNF TKEEEEIIVK LHATLGNRWS LIAGHLPART DNEIKNYWNS HLSKKLQSFQ  120
QNGLDVGGTA VVDLSKLPGG VRRRGGRTSR LRTTTERNTK NGTTRREKQG MVVVSPPASL  180
AQSEEGHSVV LHADQSQASS ACTFDGNTNE GVMDRNEEMV SELLCASAMD SVLVGPSEET  240
MAGWGSHDGD SGVIGGTTVE ELVPSQMDKF LDWDMEIMEA KLWDEAGDIW PWMWDSESRE  300
WGFHGVDDSG SQEESLDSWL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401630.10.0PREDICTED: transcription factor MYB12-like
TrEMBLM0T0F40.0M0T0F4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P21250_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.18e-71myb domain protein 12