PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P21090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 182aa    MW: 21342 Da    PI: 6.354
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P21090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.7e-191865148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT +Ed++lv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GSMUA_Achr5P21090_001 18 RGPWTVDEDLILVNYIAVHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 65
                           89********************************************97 PP
2Myb_DNA-binding51.81.8e-1671114146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr5P21090_001  71 RGNITPEEQLLILELHCRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 114
                            7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8041365IPR017930Myb domain
SuperFamilySSF466892.51E-3115112IPR009057Homeodomain-like
SMARTSM007173.8E-151767IPR001005SANT/Myb domain
PfamPF002491.7E-161865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-231972IPR009057Homeodomain-like
CDDcd001673.37E-112065No hitNo description
PROSITE profilePS5129422.94466120IPR017930Myb domain
SMARTSM007171.0E-1370118IPR001005SANT/Myb domain
PfamPF002493.0E-1571114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2373119IPR009057Homeodomain-like
CDDcd001672.37E-1075114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEFHGKSCGG EEELDLRRGP WTVDEDLILV NYIAVHGEGR WNSLARCAGL KRTGKSCRLR  60
WLNYLRPDVR RGNITPEEQL LILELHCRWG NRWSKIAQHL PGRTDNEIKN YWRTRVQKHA  120
KQLKCDVNSK QFKDDNSADV SQLGEFLPIP DGYADLEFPD FDQGMWGDNL WTVEDVWLQQ  180
QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241511824126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924986e-74FP092498.1 Phyllostachys edulis cDNA clone: bphyem114b06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402050.13e-95PREDICTED: transcription factor MYB108-like
SwissprotQ10MB47e-80MYB2_ORYSJ; Transcription factor MYB2
TrEMBLM0T0D81e-133M0T0D8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P21090_0011e-133(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-74myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]