PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P20810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 277aa    MW: 30706.1 Da    PI: 10.2056
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P20810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-30207264359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D ++WrKYGqK++kgs++prsYY+C+s  +Cp++k+ver+ +d +++++tYeg H h+
  GSMUA_Achr5P20810_001 207 DDFSWRKYGQKPIKGSPHPRSYYKCSSMrECPARKHVERCLDDANMLIVTYEGYHSHP 264
                            99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-31197265IPR003657WRKY domain
PROSITE profilePS5081127.646200266IPR003657WRKY domain
SuperFamilySSF1182906.67E-26203265IPR003657WRKY domain
SMARTSM007747.0E-36205265IPR003657WRKY domain
PfamPF031061.7E-25207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTARSDFAIL QAAQSSLQSA DDLFRRIIAA QQLGRSSNEL CSVANGTITE FKRLLSLLDG  60
SPPPRKRIRK GPLLNTTEID PTQFMERRAF CSTVPSNGLE QKRNREADVK NLCTQSTGVL  120
EQRLMPSIRR PIYYSSISLN GGNNMAKQLW SYCCSSSSTH GSINCSSLLS YRKQHGSGEG  180
AIAGKHRIRR TIKVPVVGGK VADVPCDDFS WRKYGQKPIK GSPHPRSYYK CSSMRECPAR  240
KHVERCLDDA NMLIVTYEGY HSHPRSALAA SAVAVPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-192012631071WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6557251e-112AY655725.1 Musa acuminata WRKY transcription factor-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681661.10.0PREDICTED: probable WRKY transcription factor 15
TrEMBLM0T0B00.0M0T0B0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P20810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4896222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-42WRKY DNA-binding protein 21