PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P19930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 362aa    MW: 38860.2 Da    PI: 6.5054
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P19930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19270304135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  GSMUA_Achr5P19930_001 270 CTHCGAQKTPQWRAGPLGPKTLCNACGVRFKSGRL 304
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.7E-6725351IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78264300IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-16264318IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-13265325No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14268302IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.10E-12269311No hitNo description
PROSITE patternPS003440270295IPR000679Zinc finger, GATA-type
PfamPF003209.1E-17270304IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEAPKTSLLQ QQQPQQQGSH GVSDEDVAWA VGNGNFWGEE FSVDDLLNLE FIENEKGAEE  60
EGEEAEHKGT EDSNAGSPSP SSSSSLSFQP VSEISLPAHD AEELEWVSLI IDDSLPEFSS  120
CPGVVPLPLA PRSPDETETQ AESRRAHTIE GDSSVSPTVC VLSTEAVVPV RAKRSKRSRT  180
AAGCWSVSRP LPFAESSSDS ITTTTSSSCA SSFSSPALSF HRVTNHLSAA GEKSILLCGS  240
LPPDKQQKPN KRGRKPKSPP SAAASNERRC THCGAQKTPQ WRAGPLGPKT LCNACGVRFK  300
SGRLLPEYRP ACSPTFVSHV HSNCHRKVIE MRRKKQAAAA PPVTSFSTRS TGPAEPVDLY  360
VM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260416e-60AC226041.1 Musa acuminata clone BAC MA4-4L11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401791.10.0PREDICTED: GATA transcription factor 6-like
TrEMBLM0T0220.0M0T022_MUSAM; GATA transcription factor
STRINGGSMUA_Achr5P19930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-38GATA transcription factor 5