PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P19060_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 28184.7 Da PI: 6.6856 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.2 | 4.3e-46 | 11 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPt+e+l+++yL++ ++g++ ++ ++i +diy+++Pw+Lp +k +e+ewyfF++r++k+++g r++r t+ g+Wkatg+d+ GSMUA_Achr5P19060_001 11 PGFRFHPTEEQLLDFYLRRVATGESASF-DIIGVLDIYRHDPWELPGLAKIGEREWYFFVPRERKSRSGGRPSRRTEGGFWKATGSDR 97 9***********************9888.99***************8888899*********************************** PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ s+ ++++glkktLvfy+grap+g++tdW+m+eyrl GSMUA_Achr5P19060_001 98 TIRSAaePRRVIGLKKTLVFYRGRAPRGTRTDWIMNEYRL 137 ***98766778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.363 | 9 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-56 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-23 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MERTVLGFEL PGFRFHPTEE QLLDFYLRRV ATGESASFDI IGVLDIYRHD PWELPGLAKI 60 GEREWYFFVP RERKSRSGGR PSRRTEGGFW KATGSDRTIR SAAEPRRVIG LKKTLVFYRG 120 RAPRGTRTDW IMNEYRLQED CTSAGVPLVE HMVLCKVYRK ATSLKELEQR AAKEEDTKAC 180 NSDQDNYHSP SNPLDSGELK ETKEEVVKEV EVSSSSAGVE WMQEPFITQP WMDHWSPYAN 240 TLNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-49 | 11 | 166 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-49 | 11 | 166 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-49 | 11 | 166 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-49 | 11 | 166 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-49 | 11 | 166 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-49 | 11 | 166 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-49 | 11 | 166 | 19 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401884.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like isoform X1 | ||||
Swissprot | Q10S65 | 4e-90 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | M0SZT5 | 0.0 | M0SZT5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P19060_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 9e-73 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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