PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P18670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 273aa MW: 31046.1 Da PI: 6.4199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P18670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.4	2e-51	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF P+deelv++yL kkv+++++++ ++ evd++++ePw+Lp +k + +ewyfFs rd+kyatg+r+nratksgyWkatgk GSMUA_Achr5P18670_001 10 LPPGFRFYPSDEELVCHYLYKKVTSERCSE-GTMVEVDLHTSEPWELPDVAKLSANEWYFFSFRDRKYATGSRTNRATKSGYWKATGK 96 79***********************999.88***********87788999**************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 d+ +++ +++ vg++ktLvfy grap+g kt Wvmhe+rle GSMUA_Achr5P18670_001 97 DRIICDPrTHARVGMRKTLVFYGGRAPNGAKTGWVMHEFRLE 138 *9856677*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.73	10	156	IPR003441	NAC domain
Pfam	PF02365	1.9E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGLREIESTL PPGFRFYPSD EELVCHYLYK KVTSERCSEG TMVEVDLHTS EPWELPDVAK 60 LSANEWYFFS FRDRKYATGS RTNRATKSGY WKATGKDRII CDPRTHARVG MRKTLVFYGG 120 RAPNGAKTGW VMHEFRLETP HSPPREDWVL CRVFHKRKGE SDHDKTASSS PTRMSSACVV 180 DQPMPDVCHD QLGSSFPALL QQEDNSSDPF LMNMALLQRN LLDFPQEMGS APAGMVGMSS 240 RCEDELGFLL DLGFEHSFGE AGMVRYELPR WQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	1	157	4	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	1	157	4	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	1	157	4	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	1	157	4	166	NO APICAL MERISTEM PROTEIN
3swm_A	9e-52	1	157	7	169	NAC domain-containing protein 19
3swm_B	9e-52	1	157	7	169	NAC domain-containing protein 19
3swm_C	9e-52	1	157	7	169	NAC domain-containing protein 19
3swm_D	9e-52	1	157	7	169	NAC domain-containing protein 19
3swp_A	9e-52	1	157	7	169	NAC domain-containing protein 19
3swp_B	9e-52	1	157	7	169	NAC domain-containing protein 19
3swp_C	9e-52	1	157	7	169	NAC domain-containing protein 19
3swp_D	9e-52	1	157	7	169	NAC domain-containing protein 19
4dul_A	1e-51	1	157	4	166	NAC domain-containing protein 19
4dul_B	1e-51	1	157	4	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401939.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like isoform X1
TrEMBL	M0SZP6	0.0	M0SZP6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P18670_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	9e-81	NAC domain containing protein 74