PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P18540_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 519aa MW: 57830.9 Da PI: 7.6748 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.1 | 1.9e-19 | 66 | 131 | 30 | 99 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + ++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ l+v+++r+ GSMUA_Achr5P18540_001 66 PVQ--NVIAKDVHGKVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 131 444..59999********************************************..4488999****997 PP | |||||||
2 | Auxin_resp | 116.7 | 2e-38 | 159 | 242 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++al++++ +GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ GSMUA_Achr5P18540_001 159 AATHAANGQPFEVVYYPRASTPEFCVKAAAVKAALRIQWYPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 242 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 8.6E-13 | 54 | 132 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-24 | 60 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-19 | 64 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.0E-17 | 65 | 131 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.18E-16 | 68 | 130 | No hit | No description |
PROSITE profile | PS50863 | 12.055 | 70 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-33 | 159 | 242 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.561 | 425 | 505 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MKDTDKCLDS QLWHACAGGM VRMPAMNSRV YYFPQGHAEH SQGFMADLET DEVFAKIRMA 60 PIRNPPVQNV IAKDVHGKVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA GDSIVFLRAE 120 NGDLCVGIRR AKRGNDSHSV FSRGIRGRGQ VRSDSVVEAA THAANGQPFE VVYYPRASTP 180 EFCVKAAAVK AALRIQWYPG MRFKMAFETE DSSRISWFMG TISSVQVADP IRWPNSPWRL 240 LQVTWDEPDL LQNVKRVNPW LVELASNMPA INLGHLPPPI KKQRVLQQPP FEGQFPVPMV 300 SGTPSVPRGS PYCCFSDSAP AGIQGARHAQ FDISLSDLHL NKLQTGLFHA GFHRLDHATP 360 PSRISTGVIV GNPTIHDKPI LTEQQISLCK SETMIFDDVT GTSSSDGNLE KATNVSDALE 420 LIIEAEHCKV FMESEDVGHS LDLSVFGSYE ELYERLGDMF GIEKSEMITH MFYKDAAGAL 480 KHAGDEPFSN FMKTARRLTI LTDSGNATQQ GRESLLPIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-51 | 8 | 263 | 19 | 353 | Auxin response factor 1 |
4ldw_A | 1e-51 | 8 | 263 | 19 | 353 | Auxin response factor 1 |
4ldw_B | 1e-51 | 8 | 263 | 19 | 353 | Auxin response factor 1 |
4ldx_A | 1e-51 | 8 | 263 | 19 | 353 | Auxin response factor 1 |
4ldx_B | 1e-51 | 8 | 263 | 19 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401950.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_009401951.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_009401952.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Refseq | XP_018682052.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | M0SZN3 | 0.0 | M0SZN3_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr5P18540_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-165 | auxin response factor 16 |
Publications ? help Back to Top | |||
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