PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P18540_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 519aa    MW: 57830.9 Da    PI: 7.6748
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P18540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.9e-19661313099
                            ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            + +   ++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   + +++ l+v+++r+
  GSMUA_Achr5P18540_001  66 PVQ--NVIAKDVHGKVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 131
                            444..59999********************************************..4488999****997 PP

2Auxin_resp116.72e-38159242183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+++++FevvY+Prast+eF+vk++ v++al++++ +GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  GSMUA_Achr5P18540_001 159 AATHAANGQPFEVVYYPRASTPEFCVKAAAVKAALRIQWYPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 242
                            68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.6E-1354132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-2460138IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1964133IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-1765131IPR003340B3 DNA binding domain
CDDcd100174.18E-1668130No hitNo description
PROSITE profilePS5086312.05570132IPR003340B3 DNA binding domain
PfamPF065071.2E-33159242IPR010525Auxin response factor
PROSITE profilePS5174518.561425505IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKDTDKCLDS QLWHACAGGM VRMPAMNSRV YYFPQGHAEH SQGFMADLET DEVFAKIRMA  60
PIRNPPVQNV IAKDVHGKVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA GDSIVFLRAE  120
NGDLCVGIRR AKRGNDSHSV FSRGIRGRGQ VRSDSVVEAA THAANGQPFE VVYYPRASTP  180
EFCVKAAAVK AALRIQWYPG MRFKMAFETE DSSRISWFMG TISSVQVADP IRWPNSPWRL  240
LQVTWDEPDL LQNVKRVNPW LVELASNMPA INLGHLPPPI KKQRVLQQPP FEGQFPVPMV  300
SGTPSVPRGS PYCCFSDSAP AGIQGARHAQ FDISLSDLHL NKLQTGLFHA GFHRLDHATP  360
PSRISTGVIV GNPTIHDKPI LTEQQISLCK SETMIFDDVT GTSSSDGNLE KATNVSDALE  420
LIIEAEHCKV FMESEDVGHS LDLSVFGSYE ELYERLGDMF GIEKSEMITH MFYKDAAGAL  480
KHAGDEPFSN FMKTARRLTI LTDSGNATQQ GRESLLPIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-51826319353Auxin response factor 1
4ldw_A1e-51826319353Auxin response factor 1
4ldw_B1e-51826319353Auxin response factor 1
4ldx_A1e-51826319353Auxin response factor 1
4ldx_B1e-51826319353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401950.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009401951.10.0PREDICTED: auxin response factor 18-like
RefseqXP_009401952.10.0PREDICTED: auxin response factor 18-like
RefseqXP_018682052.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM0SZN30.0M0SZN3_MUSAM; Auxin response factor
STRINGGSMUA_Achr5P18540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-165auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]