PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P18400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 375aa    MW: 41861.4 Da    PI: 7.6696
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P18400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr5P18400_001 14 KGLWSPEEDEKLIKHIAKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                           678*******************************************97 PP
2Myb_DNA-binding48.81.7e-1567110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg ++++E++l++++++ lG++ W++Ia++++ gRt++++k+ w++
  GSMUA_Achr5P18400_001  67 RGTFSQQEEDLIIELHAVLGNR-WSKIAAHLP-GRTDNEIKNLWNS 110
                            899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-28664IPR009057Homeodomain-like
PROSITE profilePS5129426.122965IPR017930Myb domain
SuperFamilySSF466895.24E-3012108IPR009057Homeodomain-like
SMARTSM007173.0E-141363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
CDDcd001677.91E-131761No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007171.3E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129420.90666116IPR017930Myb domain
PfamPF002492.2E-1467110IPR001005SANT/Myb domain
CDDcd001673.44E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGGHSCCYKQ KLRKGLWSPE EDEKLIKHIA KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS KIAAHLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLA EVEGGDEKPL DESTTPKGSS TPTKELLLDQ LLATHESTLS CRSSISMGCF  180
PLPQLSRAPD FCGNPTTLAA LPISSNPLLW LNHTATHSRR SMVNDATSMA LQSSCSFDSG  240
ISAWSDLTPD KDVQVHLGED NQDLKWSEYL HGAFPATAAT QAQCQPLYLD VKRGGQFAMN  300
GLSTWHQSPQ LQQQSHASDI YAKDFHSETM IVDLNNSDRL NQCNYSPEEC MQNLTGKLVC  360
VLSSKSNAYL YHLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401970.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ8VZQ24e-85MYB61_ARATH; Transcription factor MYB61
TrEMBLM0SZL90.0M0SZL9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P18400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-85myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]