PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P18390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 606aa    MW: 64701.6 Da    PI: 5.4216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P18390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-16374420455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  GSMUA_Achr5P18390_001 374 VHNLSERRRRDRINEKMRALQELIPNC-----SKVDKASMLDEAIEYLKTLQ 420
                            6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-20367428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-20368429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.571370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-17373424No hitNo description
PfamPF000104.4E-14374420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MPLSEFYQAS ARKKFDAAQS NKMASRSSNR SSSMPDNEFV ELLWENGPVV MQGKSNRPRK  60
TSIATTNFSL PADRAEGKDS TAIANMPKLG VLEAMDPFVS NFSPSDPSGN AGIISTQFDN  120
MVPWINYPIE EDPASSNYCS EFFSEISGIS MPANENNSFG HSTPYVEHGI VSKALEAGSC  180
QSSLPSIMSR IENSPKKDVS SMDLMNSSLF LRPGMKGKAN LQSVENSATA TASSNRIEST  240
VIQSCSGLQS TSGIQGELNS VSSMLEMGSS AETPREIASV EPLEDVCEQD MPRKNLKSVI  300
EKDHEAIAAS SSVGSGNTAG TASGDPAQGA KRKNQGEECG NHKEDLEDAS TPSRKPDADA  360
AKGRNAKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC SKVDKASMLD EAIEYLKTLQ  420
LQVQMMSMGS GLCMSPVMLP GGMQHLRVPP IAHFAQMGMN MTFGYGMGML NMNGSPGCSL  480
VAAPPPMPGT QFPCSPLQAP QGLYGMPRPT NLPMFAQGQA LPVPVPRVLP PFKSMSGLPA  540
NLNSVPEAST TTTSNPSRAP DAETSSSFKD QKASASDSQG TKGSSQRCLS TPSISDDEPV  600
ELVNGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378383ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401971.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_009401972.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLM0SZL80.0M0SZL8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P18390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-55phytochrome interacting factor 3