PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P18290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 546aa    MW: 60673 Da    PI: 7.2559
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P18290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.69.9e-15741135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSMUA_Achr5P18290_001  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                           99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-8156IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-10544No hitNo description
CDDcd002021.63E-14652No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.9E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.5E-7281372IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYVPLHA REAFDSDELK  60
VPKIKNISFK PKEHKLQKKK QSNNILESEC EIQYCDQNFH KIAEGDTSNR SSSGSAISGS  120
DSCVQFGTTD ASDVTGSVQS NVWDSLVPSK RRTFVTRPKP SPVEKLTKDL CSILHEEQAS  180
NLSITSEDDL LYESLTPFDS SEIGYGGVLI KHPNSKSVEE ESEASSLPVD KSYLRNESYT  240
GSSFPVNIEG KGTSFLNSGT GTMKSTTQLA QENVKRGKIS HEKLKILRDR ESPLTSADLN  300
IIVKYDVFMK YLTYEERQQL MKYLPSIDTV KPPESLKNMF ASPQFLETLS YFQQLLQEGV  360
FDLSLSGANA EECRNLKRLV LLNCSNLQWL ECYQKIKDAP SKKTRGGNGT SPRRKLTGLS  420
NFSSLKRHHD KQNRDYPDSR TSMNTTMLIV SKVTDDTVDI ADHEGGCSSP RRVLASPDDR  480
SSMLASVQFI ADSPECDLLL DVPSGASFAE AELLYHPWKQ KTNRNGSWTE SGVEASDHPS  540
SSFTNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009401986.10.0PREDICTED: GATA transcription factor 26 isoform X2
TrEMBLM0SZK80.0M0SZK8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P18290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-98GATA transcription factor 26