PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P18080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 307aa    MW: 33299 Da    PI: 7.4781
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P18080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.8e-191461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++lv++++++G g+W+  ++  g++R++k+c++rw +yl
  GSMUA_Achr5P18080_001 14 KGPWTPEEDKKLVEYIQRHGHGSWRNLPKNAGLNRCGKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding57.14.1e-1867112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++++E++++++++  lG++ W+tI+r+++ gRt++++k++w+++l
  GSMUA_Achr5P18080_001  67 RGKFSEDEEQIIIHLHSILGNK-WSTISRRLP-GRTDNEIKNYWNTHL 112
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.009961IPR017930Myb domain
SuperFamilySSF466892.73E-3112108IPR009057Homeodomain-like
SMARTSM007179.9E-161363IPR001005SANT/Myb domain
PfamPF002498.4E-181461IPR001005SANT/Myb domain
CDDcd001675.00E-131661No hitNo description
PROSITE profilePS5129427.54562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2665116IPR009057Homeodomain-like
SMARTSM007178.0E-1766114IPR001005SANT/Myb domain
PfamPF002495.8E-1667112IPR001005SANT/Myb domain
CDDcd001675.72E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRPPCCDEM VVKKGPWTPE EDKKLVEYIQ RHGHGSWRNL PKNAGLNRCG KSCRLRWTNY  60
LRPDVKRGKF SEDEEQIIIH LHSILGNKWS TISRRLPGRT DNEIKNYWNT HLKKKLLLMG  120
VDPVTHAPRT DLDLLALLPV LLAAATGLGN LGSSSSDAPG LQADPVHLVR LRVLQTLIQA  180
TTAGPSIDAM NPLSAASLGC AQPNQQLVGL APDLSAVANP GGSSFQTGTK TESCSGIAVP  240
VVFSSCAVPT ARSIHPPISI PQESAPMDSP ASIPFEDWHG LNPGESNADD MICWKDIIDQ  300
ICWTGQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681695.10.0PREDICTED: transcription factor MYB30
SwissprotQ9S9Z23e-82MYB93_ARATH; Transcription factor MYB93
TrEMBLM0SZI70.0M0SZI7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P18080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-76myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]