PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P18040_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 1025aa MW: 113311 Da PI: 7.0588

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P18040_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.5e-10	959	1015	1	48
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 +++WT+eE+e l +av++lG + W +I + k+R + ++k++w++ + GSMUA_Achr5P18040_001 959 KLSWTPEEEEFLREAVHELGEKndgsiPWVKILELGRhvihKTRQPGDLKDKWRNMK 1015 689****************************9988999************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	3.54E-8	595	654	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.5E-7	600	653	IPR013083	Zinc finger, RING/FYVE/PHD-type
SMART	SM00249	7.7E-5	605	650	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	606	649	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS51294	9.732	954	1019	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-9	956	1020	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-6	958	1017	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-7	960	1015	IPR001005	SANT/Myb domain
CDD	cd11660	1.79E-11	962	1016	No hit	No description
SuperFamily	SSF46689	1.87E-8	962	1018	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence Send to blast
MACDKSGCRL GSALRVRDGI ELPSRNQKHP HVQRPRQRSR PQIGPVAVTG PDVDLLSLSA 60 SIPTSPILTV QNHGGKRSTT EPLKVSSDEA PPIASSSSSL CPKEWQPSLP VDRGHCHLPR 120 RPPPSPRRRR FFFPCSFVLC FSMTSNPLPW HWVIETLANC KQVDTSVLGD LILKDAEILI 180 GAPVPVREKV ALRYLEKLVD VDREEGPSEW ASSGKIDVNR SCEEVLSREM RKVARLFNLE 240 KDKVNLLTPD LHKFILQKRA SLSGSSLDKI KAAILQGHCQ ALLPLKEISG LLVQNEVDNF 300 QGKVSDESQR AKKLQVSTYN TEMESLRQSP AAPAPDGCNG LLQEECTRSI PQFPNQIVEG 360 FKRMLQGDGV NNGGSYQNIN EFTGNERKKI KLSTKDYHAQ SNEKDSGLLA PGSNTVISQE 420 DASESMEHLV KLNVTATNDK TIIQGSMCEL PGRENIDAGG VQMPQPQQIS SCPVPANINI 480 IMQEDSPRVG QRLPLDVFVM DDDHAHLMKD ATITKLPCNE GGSLQHVSVD GSGEKMNSAF 540 FEKSRLNVQL SVTPEIAGDG DGSCNVLSDA ELHNDIFAAE KHRLLSSQVH INDDSAIGGC 600 TEQGLCIKCD KGGELLTCGG NGCLISVHES CLGSSPIFDT SGLFYCPFCS YTRAAISYRK 660 VKKNFIQARR VLSEFIGGNF VRGHRKVSPS GVHKETNQTR VVDNSCSEHS AGSSQCKGNK 720 LNEISVEVNE HSRVERERAC DNCTSLMLNG NADLSKVHIV PQSNGEQVEV AEHQHLREPY 780 AAADNCRGDS CHARDIDVRQ GDIVMIEDHS NVQQLKTPEE EGLMLNGNAD LSKGHIVPRS 840 NREQVEVAEH QHLREPYAAA VNCPGDPCHA RDINDVRQDD IVMIEAHSNI QQLKTPEEEG 900 HASVDKVLAG EKHGKRQLED ILVVDNNGRN KSSPAKSKRH ISRAKRYSNP ILPPTRRTKL 960 SWTPEEEEFL REAVHELGEK NDGSIPWVKI LELGRHVIHK TRQPGDLKDK WRNMKKKEAS 1020 RTLNR

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence Send to blast

MACDKSGCRL GSALRVRDGI ELPSRNQKHP HVQRPRQRSR PQIGPVAVTG PDVDLLSLSA  60
SIPTSPILTV QNHGGKRSTT EPLKVSSDEA PPIASSSSSL CPKEWQPSLP VDRGHCHLPR  120
RPPPSPRRRR FFFPCSFVLC FSMTSNPLPW HWVIETLANC KQVDTSVLGD LILKDAEILI  180
GAPVPVREKV ALRYLEKLVD VDREEGPSEW ASSGKIDVNR SCEEVLSREM RKVARLFNLE  240
KDKVNLLTPD LHKFILQKRA SLSGSSLDKI KAAILQGHCQ ALLPLKEISG LLVQNEVDNF  300
QGKVSDESQR AKKLQVSTYN TEMESLRQSP AAPAPDGCNG LLQEECTRSI PQFPNQIVEG  360
FKRMLQGDGV NNGGSYQNIN EFTGNERKKI KLSTKDYHAQ SNEKDSGLLA PGSNTVISQE  420
DASESMEHLV KLNVTATNDK TIIQGSMCEL PGRENIDAGG VQMPQPQQIS SCPVPANINI  480
IMQEDSPRVG QRLPLDVFVM DDDHAHLMKD ATITKLPCNE GGSLQHVSVD GSGEKMNSAF  540
FEKSRLNVQL SVTPEIAGDG DGSCNVLSDA ELHNDIFAAE KHRLLSSQVH INDDSAIGGC  600
TEQGLCIKCD KGGELLTCGG NGCLISVHES CLGSSPIFDT SGLFYCPFCS YTRAAISYRK  660
VKKNFIQARR VLSEFIGGNF VRGHRKVSPS GVHKETNQTR VVDNSCSEHS AGSSQCKGNK  720
LNEISVEVNE HSRVERERAC DNCTSLMLNG NADLSKVHIV PQSNGEQVEV AEHQHLREPY  780
AAADNCRGDS CHARDIDVRQ GDIVMIEDHS NVQQLKTPEE EGLMLNGNAD LSKGHIVPRS  840
NREQVEVAEH QHLREPYAAA VNCPGDPCHA RDINDVRQDD IVMIEAHSNI QQLKTPEEEG  900
HASVDKVLAG EKHGKRQLED ILVVDNNGRN KSSPAKSKRH ISRAKRYSNP ILPPTRRTKL  960
SWTPEEEEFL REAVHELGEK NDGSIPWVKI LELGRHVIHK TRQPGDLKDK WRNMKKKEAS  1020
RTLNR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401240.1	0.0	PREDICTED: uncharacterized protein LOC103985310 isoform X2
TrEMBL	M0SZI3	0.0	M0SZI3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P18040_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2735	3	3