PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P14700_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

FAR1

Protein Properties

Length: 452aa MW: 49846.6 Da PI: 8.5965

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P14700_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89	6.8e-28	48	134	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY YA++vGF+vr+s+ ++s+r+++i++r+ vCs+eg+re + +++ +r+r+ tr+gCka++ vkk+ +gkw+vtk+e+eHnH l GSMUA_Achr5P14700_001 48 FYGLYARHVGFRVRISRYTRSRRDNSIISRRIVCSREGFREIRANESLYVKRPRMITRIGCKAMIIVKKM-SGKWVVTKFEKEHNHVL 134 9*******************************************999*****************.*************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-25	48	134	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MDIITSLDED TKMILTLDEG RIVSSQGDMI LEPYVGMEFG SEEAAKTFYG LYARHVGFRV 60 RISRYTRSRR DNSIISRRIV CSREGFREIR ANESLYVKRP RMITRIGCKA MIIVKKMSGK 120 WVVTKFEKEH NHVLPPSKKD PCHAGKFSNS QGAGRVSNET EIDRFSTGTK GNSQESLTVL 180 YNQLCYEAIK YAQEGATTEH TYNVAMASLK EAAEKVAAVK RNAGITAQTG VASGRTRQAF 240 LVSTESSIGS LVQVKSFHNL QSQDKARELK PQKQPVNFVL LPSGFLTDSN SSTCSTEAPF 300 VFNVTADCLH GTQPIQTVNI TNPNTVCKQS NNTTILFPER LFGSDSEGSD LPEEEKVELH 360 KLDTAPEIAK SHQKSQKNGA GLSSTTQSSG KKISMGSSEV KLGYPALPVT VYMPVVGSIA 420 ETFAGSYIIF SSFLCICNPE DRLPMYDHQG LM

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MDIITSLDED TKMILTLDEG RIVSSQGDMI LEPYVGMEFG SEEAAKTFYG LYARHVGFRV  60
RISRYTRSRR DNSIISRRIV CSREGFREIR ANESLYVKRP RMITRIGCKA MIIVKKMSGK  120
WVVTKFEKEH NHVLPPSKKD PCHAGKFSNS QGAGRVSNET EIDRFSTGTK GNSQESLTVL  180
YNQLCYEAIK YAQEGATTEH TYNVAMASLK EAAEKVAAVK RNAGITAQTG VASGRTRQAF  240
LVSTESSIGS LVQVKSFHNL QSQDKARELK PQKQPVNFVL LPSGFLTDSN SSTCSTEAPF  300
VFNVTADCLH GTQPIQTVNI TNPNTVCKQS NNTTILFPER LFGSDSEGSD LPEEEKVELH  360
KLDTAPEIAK SHQKSQKNGA GLSSTTQSSG KKISMGSSEV KLGYPALPVT VYMPVVGSIA  420
ETFAGSYIIF SSFLCICNPE DRLPMYDHQG LM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009400828.1	0.0	PREDICTED: uncharacterized protein LOC103984962 isoform X1
Refseq	XP_009400829.1	0.0	PREDICTED: uncharacterized protein LOC103984962 isoform X2
TrEMBL	M0SYJ9	0.0	M0SYJ9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P14700_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-27	FAR1 family protein