PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P14630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 551aa    MW: 60700.5 Da    PI: 8.0542
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P14630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-19841503199
                            .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            + ++t+  +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++++ l+v+++r+
  GSMUA_Achr5P14630_001  84 KIHMTVHAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTKDGDLCVGIRRA 150
                            37899************************************************..4588999****997 PP
2Auxin_resp110.51.6e-36186269183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+++++Fev+Y+Prast eF+vk+++v++a+++++++ mRfkmafetedss++++ +Gt+++v+ +dpvrWpnS+W++L+
  GSMUA_Achr5P14630_001 186 AATLAAHGKPFEVMYYPRASTLEFCVKAASVKAAMRIQWCPAMRFKMAFETEDSSRISWfMGTISSVQIADPVRWPNSPWKLLQ 269
                            68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.2E-955151IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-2376155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-1881154IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-1482149No hitNo description
PfamPF023625.2E-1784150IPR003340B3 DNA binding domain
PROSITE profilePS5086311.29388151IPR003340B3 DNA binding domain
PfamPF065078.4E-32186269IPR010525Auxin response factor
PROSITE profilePS5174518.852450530IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MKEPPSMKQT DKCLDSQLWH ACAGGMVQMP AVNSKVYYFP QGHAEHAQGV VDFGTSRRIP  60
PLILCRVTAL KFMADQETDE IFAKIHMTVH AKDVHGEIWK FRHIYRGTPR RHLLTTGWST  120
FVNQKKLVAG DSIVFLRTKD GDLCVGIRRA KRESKLMRGN GNGGSFSSGG GTRIGGRVRA  180
DSVIEAATLA AHGKPFEVMY YPRASTLEFC VKAASVKAAM RIQWCPAMRF KMAFETEDSS  240
RISWFMGTIS SVQIADPVRW PNSPWKLLQV TWDEPDLLQN VNCVNPWLVE LVSNMPAIHL  300
PPFSPPRKKL RIPQHSDFPL EGQLPTPMFP GNPLGHSTSP LCCLPDSTPA GIQGARHAQF  360
GIPLSDLHLD KLQSGLFHAG FHRLGYPTSL SKISTGLIID MLFGKQILTE EQISLSNSGD  420
MVSPGATANS SSDGNLEKTT NLSDELGLET GHCKVFMESD DVGRTLDLSV FASYEELYGT  480
LADMFRIKRS EMTSHVIYKD ATGAVKHTGD EPFSDFMKSA RRLTILIDSG SDNTGRSTLP  540
GSLDANLPCC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-4191290200388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3902237e-36HQ390223.1 Triticum aestivum clone UCDTA00674 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400817.10.0PREDICTED: auxin response factor 18 isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLM0SYJ20.0M0SYJ2_MUSAM; Auxin response factor
STRINGGSMUA_Achr5P14630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-174auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]