PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P14600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 229aa    MW: 25488.5 Da    PI: 5.7381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P14600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171360148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEde lv ++++ G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr5P14600_001 13 KGPWSPEEDEALVGYIQRCGHGNWRALPKQAGLSRCGKSCRLRWMNYL 60
                           79********************************************97 PP
2Myb_DNA-binding482.9e-1566111148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++ eE+e ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
  GSMUA_Achr5P14600_001  66 RGNFSLEEQETIIRLHETFGNR-WSSIAASLP-GRTDNEIKNVWHTHL 111
                            89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.672860IPR017930Myb domain
SuperFamilySSF466893.92E-3110107IPR009057Homeodomain-like
SMARTSM007175.6E-131262IPR001005SANT/Myb domain
PfamPF002493.1E-151360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-241467IPR009057Homeodomain-like
CDDcd001672.07E-101560No hitNo description
PROSITE profilePS5129423.56661115IPR017930Myb domain
SMARTSM007171.1E-1365113IPR001005SANT/Myb domain
PfamPF002493.7E-1466111IPR001005SANT/Myb domain
CDDcd001671.24E-1068111No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2568113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVRAPCCGIG VKKGPWSPEE DEALVGYIQR CGHGNWRALP KQAGLSRCGK SCRLRWMNYL  60
RPDIKRGNFS LEEQETIIRL HETFGNRWSS IAASLPGRTD NEIKNVWHTH LKKLVSPNTS  120
SREPKKKKKA GVVSKAQSNS DFSSCGTDSP TVSREISDDA RGSFSSDAFP EIDESFWLDA  180
FSMDDSASSV DLPPVSELSN LLVSSDSDDM DFWLQVFEGV GDLQELSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25131157108B-MYB
1gv2_A3e-25131154105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25131154105C-Myb DNA-Binding Domain
1msf_C3e-25131154105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400813.11e-164PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX84e-72MYB14_ARATH; Transcription factor MYB14
TrEMBLM0SYI91e-168M0SYI9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P14600_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-70myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]