PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P14410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SRS
Protein Properties Length: 321aa    MW: 33637.3 Da    PI: 7.9388
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P14410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702218.31.7e-67942543154
                 DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.........ksk 81 
                             g++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpaakrrerqqql+a+++ + +s++    +r+ +          +++
  GSMUA_Achr5P14410_001  94 GGGVSCQDCGNQAKKDCVHMRCRTCCKSRGFQCPTHVKSTWVPAAKRRERQQQLSATAALQHQSQRLRIVNRRPTAitstssgcnSIT 181
                            5789************************************************999988777776644444333333122222222334 PP

                 DUF702  82 kqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                            ++++ s+ + + ++    +e+ s+P+evss+avfrcvrvs +dd+e+e+aYqtavsigGhvf+GiLydqG+++
  GSMUA_Achr5P14410_001 182 RRTNPSTISCVGSTGGDGTEAVSFPAEVSSPAVFRCVRVSPMDDAEDEFAYQTAVSIGGHVFRGILYDQGPDA 254
                            44444444444444455555555************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.3E-6596253IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.1E-2898140IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.5E-26205252IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAGFSLGGGS RQGGGEEGIP PESLFLYGSG SGGGGGSRTE EITTYTRGFE LWQQHQHQHL  60
YTSTTAGLLS FSDEPLHAGG TVGPTLSMRG SGGGGGVSCQ DCGNQAKKDC VHMRCRTCCK  120
SRGFQCPTHV KSTWVPAAKR RERQQQLSAT AALQHQSQRL RIVNRRPTAI TSTSSGCNSI  180
TRRTNPSTIS CVGSTGGDGT EAVSFPAEVS SPAVFRCVRV SPMDDAEDEF AYQTAVSIGG  240
HVFRGILYDQ GPDAQYPFHG DQPSSSTAAA AITTAAAFAT NLTAAPPTSS TAGLLDPSAL  300
YPTPLSSFMA GTQFFPHHPR P
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687734e-39EU968773.1 Zea mays clone 324045 SHI mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400794.11e-173PREDICTED: protein SHI RELATED SEQUENCE 1-like
RefseqXP_009400795.11e-173PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9SD405e-66SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLM0SYH00.0M0SYH0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P14410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-65Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]