PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P13580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 337aa    MW: 36155.4 Da    PI: 5.9904
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P13580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.8e-19260294135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSMUA_Achr5P13580_001 260 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 294
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.556254290IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-16254308IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.28E-14257317No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14258292IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-13259301No hitNo description
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
PfamPF003208.2E-17260294IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEHFFFSSAP TFRSGVKTLV SCFGRIFGVN CGGLRGLVAL QVEKETGMEA LRATSRPELL  60
YTGQQKQNQG VLSEEAGWFL ERGNLVGEGF SVDDLLNLGE FAENEMETEE DEAGREFGTD  120
AEATRNETER SSSPSSSSSG VSLCCLQAHD AEELEWVSLI IDDSIPEFPP PCPSSGPTVC  180
ALSTEAAVPV KAKRSKRFRS AAAAWSMSGP LPFSDSSSSS TTTSASSCSS TSSSSTFLIY  240
DPSPKAPPPS SSTASGERRC SHCGVQKTPQ WRAGPLGAKT LCNACGVRFK SGRLLPEYRP  300
ACSPTFVSHM HSNSHRKVLE MRRKKEAELV APPVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916969e-53FP091696.1 Phyllostachys edulis cDNA clone: bphylf033o22, full insert sequence.
GenBankFP0935419e-53FP093541.1 Phyllostachys edulis cDNA clone: bphylf026a09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400702.11e-164PREDICTED: GATA transcription factor 6-like
TrEMBLM0SY870.0M0SY87_MUSAM; GATA transcription factor
STRINGGSMUA_Achr5P13580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-41GATA transcription factor 5