PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P13530_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 30681.4 Da PI: 8.7006

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P13530_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	7.7e-19	130	184	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++ ++s +++ LAk+l+L rqV vWFqNrRa+ k GSMUA_Achr5P13530_001 130 RKKLRLSKDQSAVLEESFKEHTTLSPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184 788899***********************************************98 PP
2	HD-ZIP_I/II	126.4	1.3e-40	130	219	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr GSMUA_Achr5P13530_001 130 RKKLRLSKDQSAVLEESFKEHTTLSPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR 217 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +l GSMUA_Achr5P13530_001 218 -AL 219 .55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	6.4E-22	3	102	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	2.6E-19	113	180	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.84E-18	120	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.41	126	186	IPR001356	Homeobox domain
SMART	SM00389	6.1E-17	128	190	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-16	130	184	IPR001356	Homeobox domain
CDD	cd00086	1.33E-15	130	187	No hit	No description
PROSITE pattern	PS00027	0	161	184	IPR017970	Homeobox, conserved site
SMART	SM00340	1.5E-26	186	229	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.1E-11	186	220	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MLLEKEDLAL SLSLSSSANR FDRLGLVPSS SSSPSRSLPS SCQQWSRLLL ARSAGEARRG 60 LRTIDVNQPP PAGAAAGRPD SEEADASSPN SGVSSVGGKR PAEREAEHDA EPSCSRGASD 120 EEEGDGDGSR KKLRLSKDQS AVLEESFKEH TTLSPKQKLA LAKQLNLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEFLKRCCE NLTEENRRLQ KEVQELRALK LSPQLYMQMT PPTTLTMCPS 240 CERVSKPSFS TTSTTNPPPS EAAAPRSLRP PFLDAPPQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	SRKKLRL
2	178	186	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269\|PubMed:10477292, ECO:0000269\|PubMed:11260495, ECO:0000269\|PubMed:8449400}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269\|PubMed:8106086}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681432.1	1e-179	PREDICTED: homeobox-leucine zipper protein HAT4-like
Swissprot	Q05466	3e-85	HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBL	M0SY82	0.0	M0SY82_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P13530_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	6e-66	homeobox protein 2

Publications ? help Back to Top
Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development. Plant Signal Behav, 2014. [PMID:23838958] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Francisco M, et al. Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense. Front Plant Sci, 2016. 7: p. 1010 [PMID:27462337] Müller-Moulé P, et al. YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance. PeerJ, 2016. 4: p. e2574 [PMID:27761349] Ivarson E, et al. Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre. Front Plant Sci, 2016. 7: p. 2032 [PMID:28119714] Kasulin L, et al. A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina. Mol. Ecol., 2017. 26(13): p. 3389-3404 [PMID:28316114] Singh M,Gupta A,Singh D,Khurana JP,Laxmi A Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth. Sci Rep, 2017. 7(1): p. 16101 [PMID:29170398]